PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG005607t1
Common NameTCM_005607
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 471aa    MW: 50849.5 Da    PI: 8.0276
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG005607t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.81.2e-15296341555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  Thecc1EG005607t1 296 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 341
                       9************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.5E-18289350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-19289352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.815291340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.15E-17296345No hitNo description
PfamPF000103.2E-13296341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-18297346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MSQCVPSWDL DDNPAIARHS LRSNSNSTAP DVPMLDYEVA ELTWENGQLA MHSLGPPRVP  60
AKPLNSTSPS KYTWDKPRAG GTLESIVNQA TSFPYRNVSL DGGRDELVPW FDHHRAAVAA  120
AAVASSSATM TMDALVPCSN RSEDRTTHVM ESIRGLGGTC VVGCSTRVGS CSGPTGTQDD  180
GVLLTGKRAR EARVSVAPEW SSKDQNASAS ATFGTDSQHV TVDSYEKDFG VGFTSTSLGS  240
PENTSSPRPC TKATTADDHD SVCHSRPQRK AGEEDKRKET GKSSVSTKRS RAAAIHNQSE  300
RKRRDKINQR MKTLQKLVPN SSKTDKASML DEVIEYLKQL QAQVHMMSRM NIPPMMFPMT  360
MQQQLQMSMM APMGMGMGMG MGIGMGVMDM STMGRPNITG ISPVLPNPFV TMTPWDGSGD  420
RLQAASAAVM PDPLSAFLAC QSQPITMDAY SRMAAMYQQM QHPPASSSKN *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1299304ERKRRD
2300305RKRRDK
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3932931e-71GQ393293.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0258 SSR marker CGR5167 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017969485.10.0PREDICTED: transcription factor UNE10 isoform X1
SwissprotQ8GZ381e-124UNE10_ARATH; Transcription factor UNE10
TrEMBLA0A061DW910.0A0A061DW91_THECC; Basic helix-loop-helix DNA-binding superfamily protein isoform 1
STRINGEOX963370.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-122bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]