PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG005601t1
Common NameTCM_005601
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C2H2
Protein Properties Length: 572aa    MW: 64704.9 Da    PI: 7.8463
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG005601t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00023439461123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y+C+ C+k+F++   L  H  +H
  Thecc1EG005601t1 439 YRCETCNKVFKSYQALGGHRASH 461
                       9************9999998887 PP
2zf-C2H210.70.0017492514123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++Cp C ++Fs+   L  H r+H
  Thecc1EG005601t1 492 HECPVCFRVFSSGQALGGHKRSH 514
                       78******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139120.0083218233IPR007087Zinc finger, C2H2
PfamPF139121.9E-11439463IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.596439466IPR007087Zinc finger, C2H2
SuperFamilySSF576671.1E-7439514No hitNo description
SMARTSM003550.012439461IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280441461IPR007087Zinc finger, C2H2
PROSITE profilePS501579.224492514IPR007087Zinc finger, C2H2
PfamPF139128.1E-11492514IPR007087Zinc finger, C2H2
SMARTSM003550.19492514IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280494514IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MKTEIYELKQ GCYTASGKKE KKKAGSALFD HFTSVFPVGP KTLDEDVRGG HIKEYFKCSL  60
CCQYCHPHRW ACHTMWSSLR QLQFLSMLNW GSSRSSRHAK ATNTLTVGPN LTGKKLRGFL  120
RTGHPWGVFS IVCFVVTTNP SSFLDLYKQK TPVYPGNLLL IPEMPLKKGQ VGKVQIKERR  180
GNKYRNGQVS HFFTLFLCFF KTLSPQGKDR VQSSQPLSFV NGKALGGHMR SHMLHFPVPP  240
KVEEQERLEV AQNQPSEESE AASASFSSSE EEGEEKGQFY GLRENPKRSV RLVDPEFVDA  300
GSVVLQDRES ETESHKNPTR RRSKRTRKIL EHHQYHHQQQ ESQELQEETI KKLKDNNNQL  360
SKTESWAEPE PVSSISDTTT EEDVAFCLMM LSRDQWKSKV HQEDDEEEAT EIEKSMEETD  420
ESEEYFKISK VNRTTRGKYR CETCNKVFKS YQALGGHRAS HKKIKAYSPA THETELEAEN  480
VGACSVTEKK IHECPVCFRV FSSGQALGGH KRSHVTGQVV ATTESTPVKS SKKLVDNLID  540
LNLPAPMDDD DVSQIELSAV SDAEFVVCNN V*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017974698.10.0PREDICTED: zinc finger protein ZAT9
TrEMBLA0A061DUC10.0A0A061DUC1_THECC; C2H2-like zinc finger protein, putative
STRINGEOX963300.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.14e-62C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]