PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG005431t1
Common NameTCM_005431
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ARR-B
Protein Properties Length: 501aa    MW: 56293.2 Da    PI: 5.1049
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG005431t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like759.9e-24205258155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       kp+l Wt+eLH+rF+ea++ L G++ A Pk+il++m+v+gL  e+v SHLQkYRl
  Thecc1EG005431t1 205 KPKLIWTNELHNRFLEAIKVL-GIDGAHPKKILQHMNVPGLKKENVSSHLQKYRL 258
                       79*******************.********************************8 PP
2Response_reg51.55.6e-18221301109
                       EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
      Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 
                       vl+vd + + + ++ ++l++ gy ev +a+ ++ea  +++e++  +Dlil    +p+md +ell+++r+ + klp+++++   + + +l  l 
  Thecc1EG005431t1  22 VLLVDGDSTCLTIVSKMLRRLGY-EVMTAKRATEAFCIIQERQyeIDLILAEGCLPDMDKYELLETMRKIS-KLPVVLMSIDYNGKAVLGSLF 112
                       89*********************.***************999999************************99.********99999999999** PP

                       TTESEEEESS--HHHHHH CS
      Response_reg  92 aGakdflsKpfdpeelvk 109
                        Ga  +l+Kp+++++l +
  Thecc1EG005431t1 113 KGAVLYLVKPIAMDDLKN 130
                       **************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23009.7E-2419143No hitNo description
SuperFamilySSF521722.13E-2219135IPR011006CheY-like superfamily
SMARTSM004482.2E-1420132IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011028.62521136IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.1E-1322130IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.07E-1723136No hitNo description
SuperFamilySSF466898.96E-18203262IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.3E-25204262IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-20205258IPR006447Myb domain, plants
PfamPF002491.5E-5210257IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MNSEMAISVE SSINTACAGV TVLLVDGDST CLTIVSKMLR RLGYEVMTAK RATEAFCIIQ  60
ERQYEIDLIL AEGCLPDMDK YELLETMRKI SKLPVVLMSI DYNGKAVLGS LFKGAVLYLV  120
KPIAMDDLKN LWQFAFIKES KNVVAAEEIF GFEEELSLEN ASDVTVESQP LIGEGGQNYQ  180
NEKRERSDDM ENNEEDNDDS VALKKPKLIW TNELHNRFLE AIKVLGIDGA HPKKILQHMN  240
VPGLKKENVS SHLQKYRLSL KREQYAIQKT MSRGSAVEHV VSHHLSSPFS PQEGSVKFEN  300
WQSMAVADQP DTNGLIQENL NGHMPIPSLC SAYLLKHANS NCNDELMIKF EQQTPCNKQL  360
DSAHSEFNLT GDRVTVNDGL VGFHQIGNSE QFLKGETDLL NIGDSGLESL LHCPKPFDGS  420
LQEKQQKQLK FLLPEPSQLP PHPQEQEEHD VFGAERGREF NEVFTMGKRK VNYPMMRILM  480
ISGRSISFMS GYIAWCVFNL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-17202262262ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF8129791e-61JF812979.1 Theobroma cacao clone TSH1188 microsatellite mTc-UNICAMP12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017980883.10.0PREDICTED: two-component response regulator ARR14
TrEMBLA0A061E1F60.0A0A061E1F6_THECC; Response regulator 2, putative
STRINGEOX960980.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1721079
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.18e-48response regulator 1
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]