PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG005425t1 | ||||||||
Common Name | TCM_005425 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | ERF | ||||||||
Protein Properties | Length: 284aa MW: 30967.1 Da PI: 8.6988 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.9 | 3.4e-20 | 31 | 81 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++ GVr+++ +grWvAeI+d s +r r +lg+++t+eeAa+a+++a+++l+ge Thecc1EG005425t1 31 RFVGVRQRP-SGRWVAEIKDSS---QRVRLWLGTYDTPEEAARAYDEAARALRGE 81 589******.7*********43...36**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 20.534 | 31 | 88 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-28 | 31 | 88 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.1E-37 | 31 | 94 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.4E-15 | 31 | 81 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.56E-31 | 31 | 90 | No hit | No description |
SuperFamily | SSF54171 | 4.97E-20 | 32 | 88 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.7E-7 | 32 | 43 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-7 | 54 | 70 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MAGSETAKAT TTGITTTDNT MSQPTKPMVR RFVGVRQRPS GRWVAEIKDS SQRVRLWLGT 60 YDTPEEAARA YDEAARALRG ENARTNFAPV NHNSSQSGSS PSNGGFVSQS DGRHGLSFSS 120 LKAKLSKNLQ SIMARTTENK STKSRVSDHF TFASIFHFRN YQYQNPPVDM KNIEKVVQPS 180 IIVPRAVDEP PSSNWDSSSV SDCSNEWVGF RQHGFDSDGS DIGEVSFGDQ GFADQMMGWM 240 DSPEISPRIM SPADGGSRSK RFKVSSSVVV PPTFSGSTCN TDN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-14 | 31 | 93 | 14 | 76 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007051933.2 | 0.0 | PREDICTED: ethylene-responsive transcription factor ESR2 | ||||
TrEMBL | A0A061DTN1 | 0.0 | A0A061DTN1_THECC; AP2/ERF domain-containing transcription factor | ||||
STRING | EOX96090 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18292 | 8 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 1e-16 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG005425t1 |
Entrez Gene | 18614220 |
Publications ? help Back to Top | |||
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