PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG005412t2

Common Name

TCM_005412

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

HD-ZIP

Protein Properties

Length: 819aa MW: 88681.7 Da PI: 6.279

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG005412t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.1	4.6e-21	113	168	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r eL+k+l L++rqVk+WFqNrR+++k Thecc1EG005412t2 113 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 168 688999***********************************************999 PP
2	START	210.6	5.9e-66	322	546	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 ela++a++elvk+a+ +ep+W +s e++n de+l++f++ + + +ea+r++gvv+ ++ lve+l+d+ +W e+++ + + Thecc1EG005412t2 322 ELALAAMDELVKMAQTDEPLWIRSLeggrEILNHDEYLRTFTPCIGmkpggFVTEASRETGVVIINSLALVETLMDST-RWAEMFPcmiaRTS 413 5899************************************9998999*************************.********** PP EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEE CS START 81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtw 166 t++vissg galqlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d ++ + + +v +++lpSg+++++++ng+skvtw Thecc1EG005412t2 414 TTDVISSGmggtrnGALQLMHAELQVLSPLVPvREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPTFVNCRRLPSGCVVQDMPNGYSKVTW 506 **********************************************************999************************ PP EE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 167 vehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 veh++++++++h+l+r+l++sg+ +ga++wvatlqrqce+ Thecc1EG005412t2 507 VEHAEYEESQVHQLYRPLLSSGMGFGAQRWVATLQRQCEC 546 ************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	9.84E-21	95	170	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.4E-22	100	170	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.216	110	170	IPR001356	Homeobox domain
SMART	SM00389	9.9E-18	111	174	IPR001356	Homeobox domain
CDD	cd00086	1.32E-18	112	170	No hit	No description
Pfam	PF00046	1.4E-18	113	168	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	145	168	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	44.892	313	549	IPR002913	START domain
SuperFamily	SSF55961	3.3E-34	315	546	No hit	No description
CDD	cd08875	5.18E-130	317	545	No hit	No description
Pfam	PF01852	1.7E-57	322	546	IPR002913	START domain
SMART	SM00234	3.8E-51	322	546	IPR002913	START domain
SuperFamily	SSF55961	5.22E-24	574	811	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009827	Biological Process	plant-type cell wall modification
GO:0042335	Biological Process	cuticle development
GO:0043481	Biological Process	anthocyanin accumulation in tissues in response to UV light
GO:0048765	Biological Process	root hair cell differentiation
GO:0005634	Cellular Component	nucleus
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 819 aa Download sequence Send to blast
MSFGGFLDNS SGGGGARIVA DIPYSNNMPT GAIAQPRLVS PSLAKNMFNS PGLSLALQPN 60 IDNQGDGTRM GENFEGSVGR RSREEEHESR SGSDNMDGGS GDDQDAADNP PRKKRYHRHT 120 PQQIQELEAL FKECPHPDEK QRLELSKRLC LETRQVKFWF QNRRTQMKTQ LERHENSLLR 180 QENDKLRAEN MSIRDAMRNP ICTNCGGPAI IGDISLEEQH LRIENARLKD ELDRVCALAG 240 KFLGRPISAL ATSIAPPMPN SSLELGVGSN GFGGLSTVPT TLPLGPDFGG GITNALPVAP 300 PNRPTTGVTG LDRSVERSMF LELALAAMDE LVKMAQTDEP LWIRSLEGGR EILNHDEYLR 360 TFTPCIGMKP GGFVTEASRE TGVVIINSLA LVETLMDSTR WAEMFPCMIA RTSTTDVISS 420 GMGGTRNGAL QLMHAELQVL SPLVPVREVN FLRFCKQHAE GVWAVVDVSI DTIRETSGAP 480 TFVNCRRLPS GCVVQDMPNG YSKVTWVEHA EYEESQVHQL YRPLLSSGMG FGAQRWVATL 540 QRQCECLAIL MSSTVPTRDH TAITASGRRS MLKLAQRMTD NFCAGVCAST LHKWNKLNNA 600 GNVDEDVRVM TRKSVDDPGE PPGIVLSAAT SVWLPVSPQR LFDFLRDERL RSEWDILSNG 660 GPMQEMAHIA KGQDHGNCVS LLRASAMNAN QSSMLILQET CIDAAGSLVV YAPVDIPAMH 720 VVMNGGDSAY VALLPSGFAI VPDGPGSRGP TSNGHVNGNG GGGGGRSQRV GGSLLTVAFQ 780 ILVNSLPTAK LTVESVETVN NLISCTVQKI KAALQCES*

Sequence ? help Back to Top

Protein Sequence Length: 819 aa Download sequence Send to blast

MSFGGFLDNS SGGGGARIVA DIPYSNNMPT GAIAQPRLVS PSLAKNMFNS PGLSLALQPN  60
IDNQGDGTRM GENFEGSVGR RSREEEHESR SGSDNMDGGS GDDQDAADNP PRKKRYHRHT  120
PQQIQELEAL FKECPHPDEK QRLELSKRLC LETRQVKFWF QNRRTQMKTQ LERHENSLLR  180
QENDKLRAEN MSIRDAMRNP ICTNCGGPAI IGDISLEEQH LRIENARLKD ELDRVCALAG  240
KFLGRPISAL ATSIAPPMPN SSLELGVGSN GFGGLSTVPT TLPLGPDFGG GITNALPVAP  300
PNRPTTGVTG LDRSVERSMF LELALAAMDE LVKMAQTDEP LWIRSLEGGR EILNHDEYLR  360
TFTPCIGMKP GGFVTEASRE TGVVIINSLA LVETLMDSTR WAEMFPCMIA RTSTTDVISS  420
GMGGTRNGAL QLMHAELQVL SPLVPVREVN FLRFCKQHAE GVWAVVDVSI DTIRETSGAP  480
TFVNCRRLPS GCVVQDMPNG YSKVTWVEHA EYEESQVHQL YRPLLSSGMG FGAQRWVATL  540
QRQCECLAIL MSSTVPTRDH TAITASGRRS MLKLAQRMTD NFCAGVCAST LHKWNKLNNA  600
GNVDEDVRVM TRKSVDDPGE PPGIVLSAAT SVWLPVSPQR LFDFLRDERL RSEWDILSNG  660
GPMQEMAHIA KGQDHGNCVS LLRASAMNAN QSSMLILQET CIDAAGSLVV YAPVDIPAMH  720
VVMNGGDSAY VALLPSGFAI VPDGPGSRGP TSNGHVNGNG GGGGGRSQRV GGSLLTVAFQ  780
ILVNSLPTAK LTVESVETVN NLISCTVQKI KAALQCES*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00421	DAP	Transfer from AT4G00730	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007051913.2	0.0	PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X2
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A061DTK7	0.0	A0A061DTK7_THECC; HD domain class transcription factor isoform 2
STRING	EOX96069	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG005412t2
Entrez Gene	18614208

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]