PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG005402t1
Common NameTCM_005402
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 550aa    MW: 62010.7 Da    PI: 8.4231
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG005402t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.14.2e-1857103148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +g WT+eEd+ l  av+++ g++Wk+Ia++++  Rt+ qc +rwqk+l
  Thecc1EG005402t1  57 KGGWTEEEDKMLTTAVQKFNGKNWKKIAECVP-DRTDVQCLHRWQKVL 103
                       688*****************************.************986 PP

2Myb_DNA-binding59.48e-19109155148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +g+W++eEdel+ ++v++ G++ W+ Ia++++ gR +kqc++rw+++l
  Thecc1EG005402t1 109 KGPWSKEEDELIFELVEKQGKKKWSEIAKYLP-GRIGKQCRERWFNHL 155
                       79******************************.*************97 PP

3Myb_DNA-binding52.79.9e-17162203245
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                        +WT+eE++ l++a+  +G++ W+ Ia+ ++ gRt++++k++w+
  Thecc1EG005402t1 162 TAWTEEEELVLIRAHGTYGNR-WAEIAKLLP-GRTENSIKNHWN 203
                       68*******************.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.49352103IPR017930Myb domain
SuperFamilySSF466891.24E-1755112IPR009057Homeodomain-like
SMARTSM007173.4E-1656105IPR001005SANT/Myb domain
PfamPF002494.2E-1657103IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-2359117IPR009057Homeodomain-like
CDDcd001675.59E-1460103No hitNo description
PROSITE profilePS5129431.002104159IPR017930Myb domain
SuperFamilySSF466892.46E-31106202IPR009057Homeodomain-like
SMARTSM007175.8E-18108157IPR001005SANT/Myb domain
PfamPF002497.5E-18109155IPR001005SANT/Myb domain
CDDcd001671.30E-15111155No hitNo description
Gene3DG3DSA:1.10.10.602.5E-27118162IPR009057Homeodomain-like
PROSITE profilePS5129421.266160210IPR017930Myb domain
SMARTSM007174.7E-17160208IPR001005SANT/Myb domain
PfamPF002492.3E-15161203IPR001005SANT/Myb domain
CDDcd001671.53E-12163203No hitNo description
Gene3DG3DSA:1.10.10.605.2E-23163210IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MEEVKEDGDN TTTGIDDVND NINYESENLL VDHQICPDVS LYCLYRRISG PTRRSTKGGW  60
TEEEDKMLTT AVQKFNGKNW KKIAECVPDR TDVQCLHRWQ KVLNPDLVKG PWSKEEDELI  120
FELVEKQGKK KWSEIAKYLP GRIGKQCRER WFNHLNPDIK KTAWTEEEEL VLIRAHGTYG  180
NRWAEIAKLL PGRTENSIKN HWNCSVKKKV ELLAASGVNR GNHDRIVECM SFGLGKPLEQ  240
KVNQGRGTNP FSLQLVLGDT DRKESNLAIS NRETCRVVRK DANVTMKTSS LTMFAKRYDD  300
GNDLTIKQHQ MHACDAQAPG NSYNLAADWY DRSHHTSFGD HVKFPFLHER TTEHCLPPSP  360
LPLSTPLNAT IAAACDGKDA VPGFVERMYT SVRPQDRNTE NVELRLGCLS YESLQLKDLN  420
TFLTTGRSFP QADSDVRKVC SPVFFNTPPV NHSCPETILR RAAKSFKNTP SIIRKRSSQS  480
TRQTSNHKES DGVGSNAKQL FLSPPKSPKL DTTAVTKSVE KRLEYVQESS SNIPRTSSTA  540
DHSSSTNST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-67602109159MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-67602109159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021281143.10.0uncharacterized protein LOC110414337
TrEMBLA0A061E1B30.0A0A061E1B3_THECC; Homeodomain-like protein, putative
STRINGEOX960580.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16672887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.11e-86Homeodomain-like protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]