PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG005402t1 | ||||||||
Common Name | TCM_005402 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | MYB | ||||||||
Protein Properties | Length: 550aa MW: 62010.7 Da PI: 8.4231 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.1 | 4.2e-18 | 57 | 103 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd+ l av+++ g++Wk+Ia++++ Rt+ qc +rwqk+l Thecc1EG005402t1 57 KGGWTEEEDKMLTTAVQKFNGKNWKKIAECVP-DRTDVQCLHRWQKVL 103 688*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 59.4 | 8e-19 | 109 | 155 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEdel+ ++v++ G++ W+ Ia++++ gR +kqc++rw+++l Thecc1EG005402t1 109 KGPWSKEEDELIFELVEKQGKKKWSEIAKYLP-GRIGKQCRERWFNHL 155 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 52.7 | 9.9e-17 | 162 | 203 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +WT+eE++ l++a+ +G++ W+ Ia+ ++ gRt++++k++w+ Thecc1EG005402t1 162 TAWTEEEELVLIRAHGTYGNR-WAEIAKLLP-GRTENSIKNHWN 203 68*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.493 | 52 | 103 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.24E-17 | 55 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.4E-16 | 56 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.2E-16 | 57 | 103 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-23 | 59 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.59E-14 | 60 | 103 | No hit | No description |
PROSITE profile | PS51294 | 31.002 | 104 | 159 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.46E-31 | 106 | 202 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.8E-18 | 108 | 157 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.5E-18 | 109 | 155 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.30E-15 | 111 | 155 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-27 | 118 | 162 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.266 | 160 | 210 | IPR017930 | Myb domain |
SMART | SM00717 | 4.7E-17 | 160 | 208 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-15 | 161 | 203 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.53E-12 | 163 | 203 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.2E-23 | 163 | 210 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 550 aa Download sequence Send to blast |
MEEVKEDGDN TTTGIDDVND NINYESENLL VDHQICPDVS LYCLYRRISG PTRRSTKGGW 60 TEEEDKMLTT AVQKFNGKNW KKIAECVPDR TDVQCLHRWQ KVLNPDLVKG PWSKEEDELI 120 FELVEKQGKK KWSEIAKYLP GRIGKQCRER WFNHLNPDIK KTAWTEEEEL VLIRAHGTYG 180 NRWAEIAKLL PGRTENSIKN HWNCSVKKKV ELLAASGVNR GNHDRIVECM SFGLGKPLEQ 240 KVNQGRGTNP FSLQLVLGDT DRKESNLAIS NRETCRVVRK DANVTMKTSS LTMFAKRYDD 300 GNDLTIKQHQ MHACDAQAPG NSYNLAADWY DRSHHTSFGD HVKFPFLHER TTEHCLPPSP 360 LPLSTPLNAT IAAACDGKDA VPGFVERMYT SVRPQDRNTE NVELRLGCLS YESLQLKDLN 420 TFLTTGRSFP QADSDVRKVC SPVFFNTPPV NHSCPETILR RAAKSFKNTP SIIRKRSSQS 480 TRQTSNHKES DGVGSNAKQL FLSPPKSPKL DTTAVTKSVE KRLEYVQESS SNIPRTSSTA 540 DHSSSTNST* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 4e-67 | 60 | 210 | 9 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 4e-67 | 60 | 210 | 9 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021281143.1 | 0.0 | uncharacterized protein LOC110414337 | ||||
TrEMBL | A0A061E1B3 | 0.0 | A0A061E1B3_THECC; Homeodomain-like protein, putative | ||||
STRING | EOX96058 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1667 | 28 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32730.1 | 1e-86 | Homeodomain-like protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG005402t1 |
Entrez Gene | 18614200 |
Publications ? help Back to Top | |||
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