PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG005269t1
Common NameTCM_005269
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB_related
Protein Properties Length: 346aa    MW: 37708.4 Da    PI: 9.7232
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG005269t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.31.7e-1374118147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  Thecc1EG005269t1  74 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 118
                       789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.12E-1668124IPR009057Homeodomain-like
PROSITE profilePS5129415.40869123IPR017930Myb domain
TIGRFAMsTIGR015571.6E-1872121IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.2E-672124IPR009057Homeodomain-like
SMARTSM007175.3E-1173121IPR001005SANT/Myb domain
PfamPF002492.9E-1174118IPR001005SANT/Myb domain
CDDcd001672.24E-876119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MVSVNPNPAQ GFYFFDPMNM GLPGLKTLPP ANTVAPPHPP PANSMSTSTA GNTAPYSEDP  60
SKKVRKPYTI TKSRESWTEQ EHDKFLEALQ LFDRDWKKIE AFVGSKTVIQ IRSHAQKYFL  120
KVQKNGTSEH VPPPRPKRKA SHPYPQKAPK SAPVVSQAAG PFQSSAALLE SGYTFRPDSS  180
SVLGNPVATA SLSSWSYNSV PTVAMSQATK DDAVLAGPTV AHNACYSSSN ESTPRTWSFG  240
EAIDLGDHGK KSRVIPDFSQ VYSFIGSVFD PSASGHLQKL KQMDPINLET VLLLMRNLSV  300
NLTSPEFEDH RRLLSSYDAE SERVKLGSSY KDIHTRKSAS AVPTA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00423DAPTransfer from AT4G01280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007051714.20.0PREDICTED: protein REVEILLE 5
SwissprotC0SVG51e-112RVE5_ARATH; Protein REVEILLE 5
TrEMBLA0A061DUW20.0A0A061DUW2_THECC; Homeodomain-like superfamily protein
STRINGEOX958710.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12902893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01280.21e-115MYB_related family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]