PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG005256t1 | ||||||||
Common Name | TCM_005256 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | WRKY | ||||||||
Protein Properties | Length: 220aa MW: 24622.1 Da PI: 9.8665 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 103.5 | 1.1e-32 | 140 | 198 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+v+r ++d+++v++tYeg Hnh+ Thecc1EG005256t1 140 LDDGYRWRKYGQKAVKNSNYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHP 198 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.9E-33 | 126 | 198 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-28 | 133 | 199 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.943 | 135 | 200 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.1E-38 | 140 | 199 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.0E-26 | 141 | 198 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MFLSPYSLRG ALRLINLQTM DGQESNQAPV PPPPQPLLSV PFNSPFLFAA PSLPSSSSSS 60 SLHPPLETQI LPDIDWVSLL SGQGVLGENK PMIESAVSLM AENGADQDEK GNKDKRKGSR 120 IKKASRPRFA FQTRSADDIL DDGYRWRKYG QKAVKNSNYP RSYYRCTHHT CNVKKQVQRL 180 SKDTSIVVTT YEGIHNHPCE KLMETLTPLL KQMQFLSRF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-24 | 130 | 197 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 1e-24 | 130 | 197 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00317 | DAP | Transfer from AT2G46130 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF031103 | 1e-108 | KF031103.1 Gossypium hirsutum WRKY transcription factor 66 (WRKY66) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021279718.1 | 1e-123 | probable WRKY transcription factor 43 | ||||
TrEMBL | A0A061DST4 | 1e-162 | A0A061DST4_THECC; WRKY DNA-binding protein 56 | ||||
STRING | EOX95854 | 1e-163 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM509 | 28 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46130.1 | 1e-58 | WRKY DNA-binding protein 43 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG005256t1 |
Entrez Gene | 18614069 |
Publications ? help Back to Top | |||
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