PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG005210t4 | ||||||||
Common Name | TCM_005210 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | bZIP | ||||||||
Protein Properties | Length: 355aa MW: 37886.1 Da PI: 8.8174 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 71.6 | 1.2e-22 | 235 | 297 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkrerrkq+NRe+ArrsR+RK+ae+eeL +kv++L+ eN +L++e+++l+++++kl+ e+ Thecc1EG005210t4 235 ERELKRERRKQSNRESARRSRLRKQAETEELGRKVESLTVENATLRSEINQLTEKSEKLRLEN 297 89*********************************************************9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 3.5E-19 | 21 | 79 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Pfam | PF16596 | 5.1E-28 | 96 | 218 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 2.2E-17 | 228 | 294 | No hit | No description |
SMART | SM00338 | 1.1E-20 | 235 | 299 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 4.7E-21 | 235 | 297 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.403 | 237 | 300 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.88E-11 | 238 | 294 | No hit | No description |
CDD | cd14702 | 9.34E-22 | 240 | 289 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 242 | 257 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MGNNDEGKSS KSDKSSSSVP TAYYGPRVAM PPYYNSAVAS GHAPPPYMWG PPQPMMPPYG 60 APYATIYSHG GVYAHPAVPL AAATVETPTK SSGNSERGLM KKLKGFDGLA MSIGNGTAEN 120 AEGGPEPRLS QSAETEASTD GSDGNTTGTD QTRRRRSREG TPTIGGDGKN EAKSNAIVPV 180 GEVTATVSPN SIGTVLSPGM TTALELRNPT TMNAKSSPTS VPCGVMPSEV WLQNERELKR 240 ERRKQSNRES ARRSRLRKQA ETEELGRKVE SLTVENATLR SEINQLTEKS EKLRLENANL 300 VEELKHTQLG QAKEIVMNNK DNKEGEMYEK SSNSGAKLHQ LLDASPRADA VAAG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 251 | 257 | RRSRLRK |
2 | 251 | 258 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00318 | DAP | Transfer from AT2G46270 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017969547.1 | 0.0 | PREDICTED: common plant regulatory factor 1 isoform X2 | ||||
Swissprot | Q99089 | 1e-122 | CPRF1_PETCR; Common plant regulatory factor 1 | ||||
TrEMBL | A0A061DSN3 | 0.0 | A0A061DSN3_THECC; G-box binding factor 3, putative isoform 4 | ||||
STRING | EOX95796 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46270.1 | 1e-84 | G-box binding factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG005210t4 |
Entrez Gene | 18614033 |
Publications ? help Back to Top | |||
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