PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG005210t1
Common NameTCM_005210
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bZIP
Protein Properties Length: 371aa    MW: 39714.1 Da    PI: 7.7392
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG005210t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_171.51.3e-22251313163
                       XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                       e+elkrerrkq+NRe+ArrsR+RK+ae+eeL +kv++L+ eN +L++e+++l+++++kl+ e+
  Thecc1EG005210t1 251 ERELKRERRKQSNRESARRSRLRKQAETEELGRKVESLTVENATLRSEINQLTEKSEKLRLEN 313
                       89*********************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077773.1E-36194IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.0E-26111234No hitNo description
Gene3DG3DSA:1.20.5.1703.5E-18245310No hitNo description
PfamPF001705.1E-21251313IPR004827Basic-leucine zipper domain
SMARTSM003381.1E-20251315IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.403253316IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.06E-11254310No hitNo description
CDDcd147026.32E-22256305No hitNo description
PROSITE patternPS000360258273IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MGNNDEGKSS KSDKSSSSVP TDQTNVHVYP DWAAMQAYYG PRVAMPPYYN SAVASGHAPP  60
PYMWGPPQPM MPPYGAPYAT IYSHGGVYAH PAVPLAAATV ETPTKSSGNS ERGLMKKLKG  120
FDGLAMSIGN GTAENAEGGP EPRLSQSAET EASTDGSDGN TTGTDQTRRR RSREGTPTIA  180
GGDGKNEAKS NAIVPVGEVT ATVSPNSIGT VLSPGMTTAL ELRNPTTMNA KSSPTSVPCG  240
VMPSEVWLQN ERELKRERRK QSNRESARRS RLRKQAETEE LGRKVESLTV ENATLRSEIN  300
QLTEKSEKLR LENANLVEEL KHTQLGQAKE IVMNNKDNKE GEMYEKSSNS GAKLHQLLDA  360
SPRADAVAAG *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1267273RRSRLRK
2267274RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017969546.10.0PREDICTED: common plant regulatory factor 1 isoform X1
SwissprotQ990891e-134CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLA0A061DUQ20.0A0A061DUQ2_THECC; G-box binding factor 3, putative isoform 1
STRINGEOX957960.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35712661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.14e-99G-box binding factor 3
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Feldbrügge M,Hahlbrock K,Weisshaar B
    The transcriptional regulator CPRF1: expression analysis and gene structure.
    Mol. Gen. Genet., 1996. 251(6): p. 619-27
    [PMID:8757392]