PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG005126t1 | ||||||||
Common Name | TCM_005126 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | ARF | ||||||||
Protein Properties | Length: 924aa MW: 104103 Da PI: 9.6079 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.7 | 4.4e-23 | 167 | 267 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++ +k+a+++ +++ + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF + + Thecc1EG005126t1 167 FCKILTASDTSTHGGFSVLRKHATDClppldMSQATPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--RGD 257 99****************************9555566679************************************************..348 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 ++el+v+v+r Thecc1EG005126t1 258 NGELRVGVRR 267 9999****98 PP | |||||||
2 | Auxin_resp | 104.9 | 9.6e-35 | 293 | 372 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha++t++ F v+Y+Pr+ s+F++ v+k+++a+k+ +svGmRfkm+fe+eds+err++Gt+vgv d++p +W++SkWrsLk Thecc1EG005126t1 293 AAHAVTTHTLFVVYYKPRT--SQFIIGVNKYLEAIKNGFSVGMRFKMRFEGEDSPERRFTGTIVGVGDISP-HWSESKWRSLK 372 79****************6..9***********************************************99.*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.85E-41 | 158 | 296 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.3E-40 | 159 | 282 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.49E-19 | 166 | 267 | No hit | No description |
SMART | SM01019 | 5.2E-22 | 167 | 269 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.097 | 167 | 269 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.0E-21 | 167 | 267 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 6.1E-32 | 293 | 372 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 9.8E-7 | 612 | 663 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 3.79E-13 | 625 | 703 | No hit | No description |
PROSITE profile | PS51745 | 27.42 | 627 | 708 | IPR000270 | PB1 domain |
Pfam | PF02309 | 5.1E-6 | 673 | 715 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 924 aa Download sequence Send to blast |
MNSYITVVSK TFVCFLAIVF LVLVLLLSLH RRYDLVWMAH VEGNPRGSSI AHAESGLGGD 60 DLYPELWKLC AGPVVEIPRV QERVFYFAQG HMEQLEASTN QELNHQAPLF NLHSKILCRV 120 LHVQLMAEQE TDEVYAQITL QPEADQSEPT SPDPCPTEAP KRTVNSFCKI LTASDTSTHG 180 GFSVLRKHAT DCLPPLDMSQ ATPTQELVAK DLHGYEWRFK HIFRGQPRRH LLTTGWSTFV 240 TSKRLVAGDA FVFLRGDNGE LRVGVRRLAR QQSTMPSSVI SSQSMHLGVL ATAAHAVTTH 300 TLFVVYYKPR TSQFIIGVNK YLEAIKNGFS VGMRFKMRFE GEDSPERRFT GTIVGVGDIS 360 PHWSESKWRS LKIQWDEPAT IQRPERVSPW EIEPFVPSAS INLVQPAVKS KRPRPVDIPA 420 SEITTNSAGS AFWCRGSTQS HELTQVGSTV EVQSSETQVM WPIRQKEIDK CLVNSSGGYN 480 SRTRPENVWP PPHVNVSLNL FRDSMDDNNK TGTPRTVLTG YASSVQSRPS NGLMLDQVEK 540 AKKSETSTSC RLFGFNLTDS SSAAGPLDKE QTSTTVDYNG VKGSTLAASD VDQNPETSKP 600 SKEQKLVASE TSTKEMQGKL GAATSMRTRT KVHMQGIAVG RAVDLTVLKG YDDLINELEK 660 MFDIKGELHP RGKWAVVFTD DEGDMMLVGD DPWTEFCKMV RKIFIYSSEE VKKMSARCKF 720 PASSLEGEGT VVSLDSEHRE PKHLWIPFTC EADFTRYRRR RKAMGLCRAR AKRRKSLFAK 780 EVLWRKNGCA RKTGADAGMG ARGNERMGSR ARWVSCPVPF AKIFKMRRGK LGQGVVFMEI 840 LLLLKANCGR QKCDFLLGWW KIHLILTFKI WDDHHSSSPQ RFNFPTLFYY FLRNKVYIQS 900 LGEKLRRQPP VIIIYRENYS SFF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-169 | 56 | 395 | 13 | 355 | Auxin response factor 1 |
4ldw_A | 1e-169 | 56 | 395 | 13 | 355 | Auxin response factor 1 |
4ldw_B | 1e-169 | 56 | 395 | 13 | 355 | Auxin response factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 410 | 414 | KRPRP |
2 | 759 | 774 | RRKAMGLCRARAKRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017969437.1 | 0.0 | PREDICTED: auxin response factor 18 | ||||
Swissprot | Q9XED8 | 0.0 | ARFI_ARATH; Auxin response factor 9 | ||||
TrEMBL | A0A061DSE7 | 0.0 | A0A061DSE7_THECC; Auxin response factor | ||||
STRING | EOX95679 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2764 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.1 | 0.0 | auxin response factor 9 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG005126t1 |
Entrez Gene | 18613961 |
Publications ? help Back to Top | |||
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