PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG005126t1
Common NameTCM_005126
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ARF
Protein Properties Length: 924aa    MW: 104103 Da    PI: 9.6079
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG005126t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.74.4e-23167267198
                       EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                       f+k+lt sd++++g +++ +k+a+++     +++ + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF   + +
  Thecc1EG005126t1 167 FCKILTASDTSTHGGFSVLRKHATDClppldMSQATPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--RGD 257
                       99****************************9555566679************************************************..348 PP

                       EE..EEEEE- CS
                B3  89 efelvvkvfr 98 
                       ++el+v+v+r
  Thecc1EG005126t1 258 NGELRVGVRR 267
                       9999****98 PP

2Auxin_resp104.99.6e-35293372183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       aaha++t++ F v+Y+Pr+  s+F++ v+k+++a+k+ +svGmRfkm+fe+eds+err++Gt+vgv d++p +W++SkWrsLk
  Thecc1EG005126t1 293 AAHAVTTHTLFVVYYKPRT--SQFIIGVNKYLEAIKNGFSVGMRFKMRFEGEDSPERRFTGTIVGVGDISP-HWSESKWRSLK 372
                       79****************6..9***********************************************99.*********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.85E-41158296IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.3E-40159282IPR015300DNA-binding pseudobarrel domain
CDDcd100171.49E-19166267No hitNo description
SMARTSM010195.2E-22167269IPR003340B3 DNA binding domain
PROSITE profilePS5086312.097167269IPR003340B3 DNA binding domain
PfamPF023623.0E-21167267IPR003340B3 DNA binding domain
PfamPF065076.1E-32293372IPR010525Auxin response factor
PfamPF023099.8E-7612663IPR033389AUX/IAA domain
SuperFamilySSF542773.79E-13625703No hitNo description
PROSITE profilePS5174527.42627708IPR000270PB1 domain
PfamPF023095.1E-6673715IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 924 aa     Download sequence    Send to blast
MNSYITVVSK TFVCFLAIVF LVLVLLLSLH RRYDLVWMAH VEGNPRGSSI AHAESGLGGD  60
DLYPELWKLC AGPVVEIPRV QERVFYFAQG HMEQLEASTN QELNHQAPLF NLHSKILCRV  120
LHVQLMAEQE TDEVYAQITL QPEADQSEPT SPDPCPTEAP KRTVNSFCKI LTASDTSTHG  180
GFSVLRKHAT DCLPPLDMSQ ATPTQELVAK DLHGYEWRFK HIFRGQPRRH LLTTGWSTFV  240
TSKRLVAGDA FVFLRGDNGE LRVGVRRLAR QQSTMPSSVI SSQSMHLGVL ATAAHAVTTH  300
TLFVVYYKPR TSQFIIGVNK YLEAIKNGFS VGMRFKMRFE GEDSPERRFT GTIVGVGDIS  360
PHWSESKWRS LKIQWDEPAT IQRPERVSPW EIEPFVPSAS INLVQPAVKS KRPRPVDIPA  420
SEITTNSAGS AFWCRGSTQS HELTQVGSTV EVQSSETQVM WPIRQKEIDK CLVNSSGGYN  480
SRTRPENVWP PPHVNVSLNL FRDSMDDNNK TGTPRTVLTG YASSVQSRPS NGLMLDQVEK  540
AKKSETSTSC RLFGFNLTDS SSAAGPLDKE QTSTTVDYNG VKGSTLAASD VDQNPETSKP  600
SKEQKLVASE TSTKEMQGKL GAATSMRTRT KVHMQGIAVG RAVDLTVLKG YDDLINELEK  660
MFDIKGELHP RGKWAVVFTD DEGDMMLVGD DPWTEFCKMV RKIFIYSSEE VKKMSARCKF  720
PASSLEGEGT VVSLDSEHRE PKHLWIPFTC EADFTRYRRR RKAMGLCRAR AKRRKSLFAK  780
EVLWRKNGCA RKTGADAGMG ARGNERMGSR ARWVSCPVPF AKIFKMRRGK LGQGVVFMEI  840
LLLLKANCGR QKCDFLLGWW KIHLILTFKI WDDHHSSSPQ RFNFPTLFYY FLRNKVYIQS  900
LGEKLRRQPP VIIIYRENYS SFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1695639513355Auxin response factor 1
4ldw_A1e-1695639513355Auxin response factor 1
4ldw_B1e-1695639513355Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1410414KRPRP
2759774RRKAMGLCRARAKRRK
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017969437.10.0PREDICTED: auxin response factor 18
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A061DSE70.0A0A061DSE7_THECC; Auxin response factor
STRINGEOX956790.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27642762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]