PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thecc1EG005120t1 | ||||||||
Common Name | TCM_005120 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 182aa MW: 20278.3 Da PI: 5.6255 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.4 | 5.9e-39 | 27 | 124 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrr+C +C+lapyfp+++ +kfa vhk+FGasnv+k+++ ++e++reda+++lvyeA ar+rdPvyG++g i++lq+ +++l + Thecc1EG005120t1 27 PCAACKMLRRRCDGKCILAPYFPSDEIEKFAGVHKVFGASNVIKMIQMVEETNREDAAKALVYEATARIRDPVYGSTGAIFQLQKMVQELTMQ 119 7******************************************************************************************** PP DUF260 94 lallk 98 l+++k Thecc1EG005120t1 120 LESTK 124 99887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.274 | 26 | 127 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.3E-39 | 27 | 124 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 182 aa Download sequence Send to blast |
MDFGYGTFSE SSKMGLEALA RARTHQPCAA CKMLRRRCDG KCILAPYFPS DEIEKFAGVH 60 KVFGASNVIK MIQMVEETNR EDAAKALVYE ATARIRDPVY GSTGAIFQLQ KMVQELTMQL 120 ESTKALVLEL QHQKDQLLGI LLNVNHRDPL SPIDGGSFSL DHDDSMAYDP AKFPVECDWI 180 F* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-34 | 27 | 128 | 11 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-34 | 27 | 128 | 11 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007051513.1 | 1e-135 | PREDICTED: LOB domain-containing protein 25 | ||||
Swissprot | Q9LQR0 | 1e-41 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A061DSL0 | 1e-134 | A0A061DSL0_THECC; LOB domain-containing protein 11 | ||||
STRING | EOX95670 | 1e-135 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18630 | 6 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G07900.1 | 6e-44 | LOB domain-containing protein 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thecc1EG005120t1 |
Entrez Gene | 18613955 |
Publications ? help Back to Top | |||
---|---|---|---|
|