PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG005109t4

Common Name

TCM_005109

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Dof

Protein Properties

Length: 264aa MW: 28930.2 Da PI: 9.1914

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG005109t4	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.1	2.2e-39	20	79	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + ++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+s Thecc1EG005109t4 20 PPEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRS 79 57899*****************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-26	19	78	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.2E-33	23	78	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.199	24	78	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	26	62	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009639	Biological Process	response to red or far red light
GO:0009845	Biological Process	seed germination
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MEEMVSNTCT RPMLERKTRP PEQLNCPRCN STNTKFCYYN NYSLTQPRYF CKTCRRYWTE 60 GGSLRNVPVG GGSRKNKRST ISSSSASSAS AKVPDLNPTN LSQFSSQNPK AHKGQDLNLA 120 FPAMQESHGI SQYLQLPKME NNNEQQNYPS SCNTSSPLSA LELLRTGMAS RGLNSFIPAP 180 TPDSNTLYST GFSMQDYKPT LSFSIDTVGN RAGIHGVQEN GGRLFFPFGE MKPISSTNEV 240 DQNKGQGNSA GYWNNGVLGG GSW*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007051497.2	0.0	PREDICTED: dof zinc finger protein DOF2.5 isoform X2
Refseq	XP_007051499.2	0.0	PREDICTED: dof zinc finger protein DOF2.5 isoform X3
Refseq	XP_017980017.1	0.0	PREDICTED: dof zinc finger protein DOF2.5 isoform X3
Swissprot	Q43385	2e-64	DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBL	A0A061DUF0	0.0	A0A061DUF0_THECC; F-box family protein, putative isoform 4
TrEMBL	A0A061E0A4	0.0	A0A061E0A4_THECC; F-box family protein, putative isoform 1
STRING	EOX95655	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	1e-74	Dof family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG005109t4
Entrez Gene	18613945

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]