PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG005109t3 | ||||||||
Common Name | TCM_005109 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | Dof | ||||||||
Protein Properties | Length: 285aa MW: 31447.2 Da PI: 9.3536 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.9 | 2.5e-39 | 41 | 100 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + ++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+s Thecc1EG005109t3 41 PPEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRS 100 57899*****************************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-26 | 40 | 99 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.5E-33 | 44 | 99 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.199 | 45 | 99 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 47 | 83 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009639 | Biological Process | response to red or far red light | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MWMINPFWKV QGFQDIGLVK PMEEMVSNTC TRPMLERKTR PPEQLNCPRC NSTNTKFCYY 60 NNYSLTQPRY FCKTCRRYWT EGGSLRNVPV GGGSRKNKRS TISSSSASSA SAKVPDLNPT 120 NLSQFSSQNP KAHKGQDLNL AFPAMQESHG ISQYLQLPKM ENNNEQQNYP SSCNTSSPLS 180 ALELLRTGMA SRGLNSFIPA PTPDSNTLYS TGFSMQDYKP TLSFSIDTVG NRAGIHGVQE 240 NGGRLFFPFG EMKPISSTNE VDQNKGQGNS AGYWNNGVLG GGSW* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007051498.2 | 0.0 | PREDICTED: dof zinc finger protein DOF2.5 isoform X1 | ||||
Swissprot | Q43385 | 1e-67 | DOF37_ARATH; Dof zinc finger protein DOF3.7 | ||||
TrEMBL | A0A061DSK1 | 0.0 | A0A061DSK1_THECC; F-box family protein, putative isoform 3 | ||||
STRING | EOX95655 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2528 | 26 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61850.4 | 8e-78 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG005109t3 |
Entrez Gene | 18613945 |
Publications ? help Back to Top | |||
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