PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG005028t1
Common NameTCM_005028
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 390aa    MW: 44108.8 Da    PI: 6.0358
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG005028t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.21.4e-13200251155
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Thecc1EG005028t1 200 QRMTHIAVERNRRRQMNDYLNSLRSLMPPS---YIQRGDQASIIGGAIDFVKELE 251
                       79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-16192265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.56E-12198255No hitNo description
PROSITE profilePS5088815.897199250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-13200263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.5E-11200251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-11205256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MERLQGPINP CFLEEHLEVE FLEQGFVNSE SLRFGEEEEA HFSIPSLEDK MPFLQMLQSV  60
QSPQLFAFKE PNFQTLLRLQ HLKKPWEINN NPFIPEMETQ IQALELESCV THEIFDLQSP  120
VQSETKDLKK NPHSISCFEV VSAESNQDQP KSATADNCSR EGNSGSSPPK SFTKSPPITR  180
ERRKRKRTRP AKNKEEVESQ RMTHIAVERN RRRQMNDYLN SLRSLMPPSY IQRGDQASII  240
GGAIDFVKEL EQLLQSLEAQ KRMRRIEESS NSNNSVAKSA MEISQPETGM GSEDGNCGKE  300
IKAESKSGAA EIEVNVTHNH VNLKIQCSRR PGQLLQAIVT LESLRLTVLH LNITSSQASI  360
LYSFNLKMED DCKLRSADEI AAAVHQIFS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181186RRKRKR
2200211RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007051418.20.0PREDICTED: transcription factor bHLH67
TrEMBLA0A061DS780.0A0A061DS78_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRINGEOX955750.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31192666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61950.14e-81bHLH family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]