PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG005021t10 | ||||||||
Common Name | TCM_005021 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | MYB_related | ||||||||
Protein Properties | Length: 708aa MW: 76670.8 Da PI: 6.638 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.7 | 4.2e-16 | 24 | 68 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+ ++++a k++G W +I +++g ++t+ q++s+ qk+ Thecc1EG005021t10 24 RERWTEEEHNRFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.68E-17 | 18 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.091 | 19 | 73 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 7.6E-17 | 22 | 71 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 7.3E-13 | 23 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-13 | 24 | 67 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-8 | 24 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.32E-9 | 26 | 69 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0042754 | Biological Process | negative regulation of circadian rhythm | ||||
GO:0043433 | Biological Process | negative regulation of sequence-specific DNA binding transcription factor activity | ||||
GO:0043496 | Biological Process | regulation of protein homodimerization activity | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 708 aa Download sequence Send to blast |
MDTYSSGEEL VIKTRKPYTI TKQRERWTEE EHNRFLEALK LYGRAWQRIE EHIGTKTAVQ 60 IRSHAQKFFS KLEKEALAKG VPIGQALDIE IPPPRPKRKP SNPYPRKTGA ATTAQVGAKD 120 GKSETPLSSL RCKQVLDLEK EPLPERPNGD EKPINLKDNQ DDSCSEVVTL LHEANCSSVS 180 SVNKNSIPTS AALRNSCTFR EFVPSLKETI QDNGTSKASN LDNSCTSHEK AAQGQKKDDV 240 DGGLRADETQ ATQNYPRHVA VHVLDGSLGT AASATTEHQN NAPRSTHQAF PTFHPPFTHV 300 CPNPEDYRSF LHVSSTFSSL IASTLLQNPA AHAAASFAAT FWPYANVDSS ADSPACSQGG 360 FPSRQMNPAP SMAAIAAATV AAATAWWAAH GLLPLCAPLH TGFTCALASA AAVPPMDNEQ 420 APATKMERKD NNDQDLSMQD QQLDPEYSEA LQAQHSASKS PTSSSSDSEA CGDAKVNTGV 480 KAADDEKAAA VTEPQDANKT KNRKQVDRSS CGSNTPSSSE VETDVLEKYE KDKEDAKGAD 540 ANHPQVECCN RRGRSCSNPS DSWKEVSEGG RLAFQALFSR EVLPQSFSPP HDGKNKGQQK 600 DKVEDDKQNS DEKDGATSAL DLNSQTVRSC SYRQGVEKNG LSRGEDIVGE GLLTIGLEHA 660 KLKARRTGFK PYKRCSVEAK ENKVMNAGSQ GEEKGPKRIR LEGEAST* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00119 | DAP | Transfer from AT1G01060 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017979084.1 | 0.0 | PREDICTED: protein LHY isoform X3 | ||||
TrEMBL | A0A061DU09 | 0.0 | A0A061DU09_THECC; Homeodomain-like superfamily protein isoform 5 | ||||
STRING | EOX95562 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01060.3 | 1e-129 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG005021t10 |
Entrez Gene | 18613877 |
Publications ? help Back to Top | |||
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