PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG005014t1
Common NameTCM_005014
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family B3
Protein Properties Length: 422aa    MW: 48193.2 Da    PI: 7.0815
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG005014t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3103.11.5e-32110214199
                       EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS. CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr. 87 
                       f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+ 
  Thecc1EG005014t1 110 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSSNEKGLLLNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGvGEs 202
                       89****************************66677899*************************************************665777 PP

                       SEE..EEEEE-S CS
                B3  88 sefelvvkvfrk 99 
                        + +l++ ++r+
  Thecc1EG005014t1 203 GKDRLFIDWRRR 214
                       888999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-43100223IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-30107214IPR015300DNA-binding pseudobarrel domain
CDDcd100172.69E-26108204No hitNo description
PfamPF023625.0E-30110214IPR003340B3 DNA binding domain
PROSITE profilePS5086315.101110215IPR003340B3 DNA binding domain
SMARTSM010194.5E-24110215IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MNFVLEEKGY CNNEEEDDEE VIRETSNFPF SSSSSSASSK YKDIAPQQHQ NLWLRTLDSQ  60
ADYKSQESAI NFDKKLELMD LSLGNNNEES NIGSCRGGDS SRSIEKEHMF DKVVTPSDVG  120
KLNRLVIPKQ HAEKYFPLDS SSNEKGLLLN FEDRNGKSWR FRYSYWNSSQ SYVMTKGWSR  180
FVKEKKLDAG DIVSFQRGVG ESGKDRLFID WRRRPNAPDP TSLAHFQLQN QLNFPQSVRW  240
GRLYSLPPQP MCMPRNYEPL HRLNYSIYPY NHHHHHQQQQ QLQLQQQQQQ HHQAFTYGNV  300
AQYHLRSSSG SHHHHQYHQI GAVQEGGGEP MVIDSVPVVQ GNKTAAKRLR LFGVNMECPT  360
QDESSSTFPH GTNTIGSDDS PHFSFSSLQS RLSNNNNTPL SGMEAEYSKK GKSSLSIDLD  420
L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-681052173116B3 domain-containing transcription factor NGA1
5os9_B3e-681052173116B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0480430.0KF048043.1 Firmiana danxiaensis microsatellite Fir_SSR12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017969631.10.0PREDICTED: B3 domain-containing transcription factor NGA1
SwissprotO827992e-84NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLA0A061DTX90.0A0A061DTX9_THECC; AP2/B3-like transcriptional factor family protein, putative
STRINGEOX955410.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.14e-80B3 family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  4. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  5. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  6. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  7. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]