PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG005011t1
Common NameTCM_005011
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family NAC
Protein Properties Length: 461aa    MW: 52564.4 Da    PI: 4.3239
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG005011t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1163.8e-3651453128
               NAM   3 pGfrFhPtdeelvveyLkkkvegkk..lelee......vikev.diykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                       +GfrFhPtd e + +   k+v +++  ++         vi+++ di++++Pw+Lp  ++++a+++ wyfF++ + ky++++rknr+t++gyWk
  Thecc1EG005011t1   5 KGFRFHPTDAEAIEHLWDKRVLDRDsiVQ--VgdflvpVITQLeDICEFQPWELPgrSELEAGDNLWYFFCSPKYKYRNSTRKNRVTREGYWK 95 
                       7************8888888998886622..1346665788888***********6448888999**************************** PP

               NAM  85 atgkdkevlsk..kgelvglkktLvfy....kgrapkgektdWvmheyrl 128
                        tg+ +e+l++  ++e  g ++tLvfy    + ++++ +kt+Wv+he+++
  Thecc1EG005011t1  96 PTGTPREILTTynGQEIRGSRQTLVFYrgrvSDQKKNENKTQWVIHEFEI 145
                       *********998778889*********444334567778*********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-363163IPR003441NAC domain
PROSITE profilePS5100541.3283163IPR003441NAC domain
PfamPF023654.4E-185145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MNYVKGFRFH PTDAEAIEHL WDKRVLDRDS IVQVGDFLVP VITQLEDICE FQPWELPGRS  60
ELEAGDNLWY FFCSPKYKYR NSTRKNRVTR EGYWKPTGTP REILTTYNGQ EIRGSRQTLV  120
FYRGRVSDQK KNENKTQWVI HEFEIPLNLP NQKSIALCRL KKKYGKVDVS RGEEGQSSHS  180
LPPNLENQAT NNAIPKDQLN SNEPLTQSEA FNEYSGNQTT FTTNEQDDDE FVDSLINNDE  240
INTEQRSNQP FFVDENEGPK LPSNFPDHAA DDDIPNNQED FGGLVNQKPL NDCVETLNSG  300
RTSEHDNSSQ SSIFIPNDQT TSIGGGNQQA TLLAENESSS LAFENHVAES SVPMEHSEFD  360
KFLREGLFMA ELSHAPEGVE YYEFSANEQD DEFWNKICFT TDEVLGSKQQ NLAESFNFSS  420
VSTMEPLYDP CPMESSRKRL RIESERLNRG EDIEAAPSQE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-19114513140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007051381.20.0PREDICTED: NAC domain-containing protein 4
TrEMBLA0A061DZT70.0A0A061DZT7_THECC; Nam protein 1, putative
STRINGEOX955380.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2221145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.12e-30NAC domain containing protein 71
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]