PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG005008t1

Common Name

TCM_005008

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

NAC

Protein Properties

Length: 339aa MW: 38960.8 Da PI: 4.5973

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG005008t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	115.5	5.4e-36	14	136	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikev..diykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +G+rFhP+d+el+++yL +kv +++ + +vi ev d++++eP++Lp ++++k wy F++r+++ kr +r+tk g+Wk tg++++ Thecc1EG005008t1 14 VGYRFHPSDKELIDHYLWNKVLDRDSAV-QVIGEVagDLCDYEPERLPgFsIRRSNDKVWYLFCRRNHN----KRVKRTTKLGFWKLTGRNRH 101 7**********************888.899999999******64333457789**9885....599*************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ + +g+kktLvfy+gr pkg+ t Wv+hey+l Thecc1EG005008t1 102 IKA--NVGIGIKKTLVFYEGRVPKGKWTPWVIHEYNL 136 99..778**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-39	12	154	IPR003441	NAC domain
PROSITE profile	PS51005	40.5	12	154	IPR003441	NAC domain
Pfam	PF02365	4.5E-22	14	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MSDEMSRCSC NDIVGYRFHP SDKELIDHYL WNKVLDRDSA VQVIGEVAGD LCDYEPERLP 60 GFSIRRSNDK VWYLFCRRNH NKRVKRTTKL GFWKLTGRNR HIKANVGIGI KKTLVFYEGR 120 VPKGKWTPWV IHEYNLPDTL PNQKGYFLCK LKKKDDEKAS IASGEEGQPS NVADDKISDN 180 SMEINIEELL AQLEDTNDSN KVGDEVVSLQ KPDFDGVQNQ SSTNEQDDEL YLVSSTQQSQ 240 IQEEHVPSYN DSTNFCGVDG NFHKIQNQSS TNEQDDEFYH VSPTRQSQIC EEHVSSYNNS 300 IIFCGFNVNF HEVQNQSSTK EEDDEFWKNI FIDDDDDA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-21	2	154	9	165	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-21	2	154	9	165	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-21	2	154	9	165	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-21	2	154	9	165	NO APICAL MERISTEM PROTEIN
3swm_A	8e-21	2	154	12	168	NAC domain-containing protein 19
3swm_B	8e-21	2	154	12	168	NAC domain-containing protein 19
3swm_C	8e-21	2	154	12	168	NAC domain-containing protein 19
3swm_D	8e-21	2	154	12	168	NAC domain-containing protein 19
3swp_A	8e-21	2	154	12	168	NAC domain-containing protein 19
3swp_B	8e-21	2	154	12	168	NAC domain-containing protein 19
3swp_C	8e-21	2	154	12	168	NAC domain-containing protein 19
3swp_D	8e-21	2	154	12	168	NAC domain-containing protein 19
4dul_A	7e-21	2	154	9	165	NAC domain-containing protein 19
4dul_B	7e-21	2	154	9	165	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017973800.1	0.0	PREDICTED: uncharacterized protein LOC18613866
TrEMBL	A0A061DT07	0.0	A0A061DT07_THECC; NAC domain containing 69-like protein isoform 1
STRING	EOX95533	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01550.1	5e-43	NAC domain containing protein 69

Link Out ? help Back to Top
Phytozome	Thecc1EG005008t1
Entrez Gene	18613865

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]