PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG004959t1 | ||||||||
Common Name | TCM_004959 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | bHLH | ||||||||
Protein Properties | Length: 614aa MW: 66751.5 Da PI: 7.7817 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.6 | 3.5e-16 | 423 | 470 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + hn ErrRRd+iN+++ L+el+P++ K++Ka++L +A+eY+k Lq Thecc1EG004959t1 423 EVHNLSERRRRDKINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 470 57*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.65E-17 | 417 | 474 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.1E-21 | 417 | 478 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.06E-21 | 417 | 483 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.508 | 420 | 469 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-13 | 423 | 470 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.4E-18 | 426 | 475 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 614 aa Download sequence Send to blast |
MAEEASESIQ PRMPNHLANL ASMCDPQILE LVWENGEILI RGLTSKTTKE SRFPCSGYFS 60 QYSEALIQRE GETSTGNRSK AGAADSTFGD PLSGLSGLTK LDHRDKNKVN SLEAGYAEHF 120 SELYEDDINV VFEPNKKCYD KELIDSHIVP VNKFKNFKQS YMSKLVEEIP QHTMNSDNVV 180 PQSSFKQSEA SVPFMRSKEE NPGIDEKRDR VNFSIFLRSP ALLKSTHRSS GATRPTSSSP 240 GLAGADEAIL EGNVRSEDLK GNARSAPRTS NPVDNLILVE PTNGSKYITS IEKEGTSLAS 300 NMKPILPHSE PQNESLPDEQ SEAVGNKDTP SNTRFPSRVR APSSNLAPNT SIKGNPGNGK 360 SIEQMVASSS VCSLGASNCP TYTLKRRYED TDLSENAMEE PEGTTKAVPS RRSKGAKRKR 420 KAEVHNLSER RRRDKINEKM RALQELIPNC NKVDKASMLD EAIEYLKTLQ LQVQMMSMGT 480 GAYMPPMMLP TVMQQINAQH LAGYSPMAVG MGMRMQMGLG CSPAQFPTTL LLSGTAAALP 540 GITTEARLNM LEFPGQVLLM SMSRSPFVSM AGRFSPQSVQ APAGVSQPPA AQVGLPGAAI 600 SLSTPKGSNP TCH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 418 | 432 | KRKAEVHNLSERRRR |
2 | 428 | 433 | ERRRRD |
3 | 429 | 434 | RRRRDK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017982981.1 | 0.0 | PREDICTED: transcription factor PIF3 | ||||
Refseq | XP_017982983.1 | 0.0 | PREDICTED: transcription factor PIF3 | ||||
TrEMBL | A0A061DRN5 | 0.0 | A0A061DRN5_THECC; Phytochrome interacting factor 3, putative | ||||
STRING | EOX95474 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16436 | 8 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 1e-36 | phytochrome interacting factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG004959t1 |
Entrez Gene | 18613821 |
Publications ? help Back to Top | |||
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