PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG004959t1
Common NameTCM_004959
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 614aa    MW: 66751.5 Da    PI: 7.7817
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG004959t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.63.5e-16423470355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       + hn  ErrRRd+iN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  Thecc1EG004959t1 423 EVHNLSERRRRDKINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 470
                       57*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.65E-17417474No hitNo description
Gene3DG3DSA:4.10.280.101.1E-21417478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-21417483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.508420469IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-13423470IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-18426475IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 614 aa     Download sequence    Send to blast
MAEEASESIQ PRMPNHLANL ASMCDPQILE LVWENGEILI RGLTSKTTKE SRFPCSGYFS  60
QYSEALIQRE GETSTGNRSK AGAADSTFGD PLSGLSGLTK LDHRDKNKVN SLEAGYAEHF  120
SELYEDDINV VFEPNKKCYD KELIDSHIVP VNKFKNFKQS YMSKLVEEIP QHTMNSDNVV  180
PQSSFKQSEA SVPFMRSKEE NPGIDEKRDR VNFSIFLRSP ALLKSTHRSS GATRPTSSSP  240
GLAGADEAIL EGNVRSEDLK GNARSAPRTS NPVDNLILVE PTNGSKYITS IEKEGTSLAS  300
NMKPILPHSE PQNESLPDEQ SEAVGNKDTP SNTRFPSRVR APSSNLAPNT SIKGNPGNGK  360
SIEQMVASSS VCSLGASNCP TYTLKRRYED TDLSENAMEE PEGTTKAVPS RRSKGAKRKR  420
KAEVHNLSER RRRDKINEKM RALQELIPNC NKVDKASMLD EAIEYLKTLQ LQVQMMSMGT  480
GAYMPPMMLP TVMQQINAQH LAGYSPMAVG MGMRMQMGLG CSPAQFPTTL LLSGTAAALP  540
GITTEARLNM LEFPGQVLLM SMSRSPFVSM AGRFSPQSVQ APAGVSQPPA AQVGLPGAAI  600
SLSTPKGSNP TCH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1418432KRKAEVHNLSERRRR
2428433ERRRRD
3429434RRRRDK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017982981.10.0PREDICTED: transcription factor PIF3
RefseqXP_017982983.10.0PREDICTED: transcription factor PIF3
TrEMBLA0A061DRN50.0A0A061DRN5_THECC; Phytochrome interacting factor 3, putative
STRINGEOX954740.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16436813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-36phytochrome interacting factor 3
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]