PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG004951t1

Common Name

TCM_004951

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

WRKY

Protein Properties

Length: 512aa MW: 55234.8 Da PI: 8.7675

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG004951t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.1	5.8e-31	269	327	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+ Thecc1EG004951t1 269 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDKSILITTYEGNHNHP 327 7*********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.8E-33	253	329	IPR003657	WRKY domain
SuperFamily	SSF118290	5.89E-28	261	329	IPR003657	WRKY domain
PROSITE profile	PS50811	29.964	263	329	IPR003657	WRKY domain
SMART	SM00774	2.4E-37	268	328	IPR003657	WRKY domain
Pfam	PF03106	6.7E-27	270	327	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence Send to blast
MEKQHRRELK FLRSGDFLRP NSGVPDRTLD DSSDHVKPTI KEMDFFSTNS QPHDPLQESK 60 INNGSSSLFD SGVNTGLNLL SSSPRVSRTT NEETPNSEMR ALRIELQRLH EENRRLRSML 120 DQITKNYNEL QGQLFMAVQK QAHGNQGEQK GAVNGMSSLT ESVQQFMDPR PSTALDVNAP 180 SASDDKTQEL SVSPVNTTEV VSKERDHQMT RIPGKHVSVE DGTDRTSQSW GSPKSPKVEQ 240 SKNEEQVSEV PFRKARVSVR ARSEAPLISD GCQWRKYGQK MAKGNPCPRA YYRCTMAVGC 300 PVRKQVQRCA EDKSILITTY EGNHNHPLPP AATAMANTTS AAAAMLLSGS TTSKDGLSSS 360 GYFPSLPYGS TMATLSASAP FPTITLDLTQ GPNAVPFFRP PPSTATFPLP LQGYPQLLGH 420 SMFSPTKLSA LPVTQLGQRP ASMVDTVTAA IASDPNFTAA LAAAISTIMG APPSNSGNTI 480 NNGGNSNASN RVPGLPGSPQ LPQSCTTFST N*

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence Send to blast

MEKQHRRELK FLRSGDFLRP NSGVPDRTLD DSSDHVKPTI KEMDFFSTNS QPHDPLQESK  60
INNGSSSLFD SGVNTGLNLL SSSPRVSRTT NEETPNSEMR ALRIELQRLH EENRRLRSML  120
DQITKNYNEL QGQLFMAVQK QAHGNQGEQK GAVNGMSSLT ESVQQFMDPR PSTALDVNAP  180
SASDDKTQEL SVSPVNTTEV VSKERDHQMT RIPGKHVSVE DGTDRTSQSW GSPKSPKVEQ  240
SKNEEQVSEV PFRKARVSVR ARSEAPLISD GCQWRKYGQK MAKGNPCPRA YYRCTMAVGC  300
PVRKQVQRCA EDKSILITTY EGNHNHPLPP AATAMANTTS AAAAMLLSGS TTSKDGLSSS  360
GYFPSLPYGS TMATLSASAP FPTITLDLTQ GPNAVPFFRP PPSTATFPLP LQGYPQLLGH  420
SMFSPTKLSA LPVTQLGQRP ASMVDTVTAA IASDPNFTAA LAAAISTIMG APPSNSGNTI  480
NNGGNSNASN RVPGLPGSPQ LPQSCTTFST N*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-21	255	331	1	76	WRKY transcription factor 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00115	ampDAP	Transfer from AT4G01720	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017969824.1	0.0	PREDICTED: probable WRKY transcription factor 47
TrEMBL	A0A061DRV7	0.0	A0A061DRV7_THECC; WRKY family transcription factor, putative
STRING	EOX95465	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7156	27	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01720.1	1e-103	WRKY family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG004951t1
Entrez Gene	18613814

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]