PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG004820t1

Common Name

TCM_004820

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

WRKY

Protein Properties

Length: 270aa MW: 30152.4 Da PI: 4.823

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG004820t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.3	2.1e-30	58	116	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+ver+++d ++++itY+++Hnh+ Thecc1EG004820t1 58 SDLWSWRKYGQKPIKGSPYPRGYYRCSTSkGCSAKKQVERCRTDASMLIITYTSSHNHP 116 699*********************9988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	9.8E-32	51	118	IPR003657	WRKY domain
SuperFamily	SSF118290	6.02E-26	55	118	IPR003657	WRKY domain
SMART	SM00774	4.0E-36	57	117	IPR003657	WRKY domain
PROSITE profile	PS50811	31.146	58	118	IPR003657	WRKY domain
Pfam	PF03106	2.4E-25	59	116	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MVMDASVSPK LDSKASEESE LRPSESQASK RRKVVEKTVV TVKIGENSGK LKNEGPPSDL 60 WSWRKYGQKP IKGSPYPRGY YRCSTSKGCS AKKQVERCRT DASMLIITYT SSHNHPGPDL 120 HTTNLMQSPK EPQTDHGDDQ PPTPKQQQLP EDPQQEEPEE VQNEPIKTSS DEDAIEEHFH 180 YLQSPLSSPR NIIINQEDLF TGNLVKTHDN LGFLLDEEPL SCPHITTSST PKSEENDFFD 240 ELEELPISSA FTSLMRSKFS DEGIPVVPS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	2e-22	58	118	17	79	Disease resistance protein RRS1
5w3x_D	2e-22	58	118	17	79	Disease resistance protein RRS1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017969931.1	0.0	PREDICTED: WRKY transcription factor 22
TrEMBL	A0A061DT66	0.0	A0A061DT66_THECC; WRKY DNA-binding protein 35, putative
STRING	EOX95271	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15371	11	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	6e-35	WRKY DNA-binding protein 35

Link Out ? help Back to Top
Phytozome	Thecc1EG004820t1
Entrez Gene	18613703

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]