PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG004765t1 | ||||||||
Common Name | TCM_004765 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | C2H2 | ||||||||
Protein Properties | Length: 194aa MW: 21156.8 Da PI: 8.3421 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.2 | 6.3e-05 | 56 | 78 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+++F ++ L H++ H Thecc1EG004765t1 56 FECPFCHRVFANSQALGGHQNAH 78 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.72E-6 | 53 | 83 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.4E-4 | 54 | 82 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.51 | 56 | 83 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 58 | 78 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MAESSIPSKS SSADMAPDKQ SDQKPSSSLK LFGFSLTEQD EILEKAEEDF GESRKFECPF 60 CHRVFANSQA LGGHQNAHKR ERQRARRAQF NSHQRYIAAA PVLSSHAVRS MPPMFPSGLS 120 SNSTGKFVSQ PGYCPSRPLL LPSTPSQYPP RIYIAQPLHF ATVADSSFTE FSGKLPEADI 180 GVDLHLKLSP SGC* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007051057.1 | 1e-140 | PREDICTED: zinc finger protein 6 | ||||
TrEMBL | A0A061DR16 | 1e-138 | A0A061DR16_THECC; Zinc finger protein 6, putative | ||||
STRING | EOX95214 | 1e-139 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15854 | 4 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06650.1 | 1e-12 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG004765t1 |
Entrez Gene | 18613657 |
Publications ? help Back to Top | |||
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