PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG004717t1 | ||||||||
Common Name | TCM_004717 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | ERF | ||||||||
Protein Properties | Length: 316aa MW: 35229.7 Da PI: 5.0039 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60 | 5.7e-19 | 75 | 123 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a+++ ++k++g Thecc1EG004717t1 75 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 123 9*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.16E-22 | 74 | 132 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.775 | 74 | 131 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-32 | 74 | 132 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-37 | 74 | 137 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.3E-12 | 75 | 86 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.49E-32 | 75 | 132 | No hit | No description |
Pfam | PF00847 | 6.5E-12 | 75 | 123 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.3E-12 | 97 | 113 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MCGGAIIAEF IPRNRGRGVT ASDLWPFAKI NGFSSDLSQP NPDASFSHFK RPQPQPSLGD 60 EQVEKKPKRQ RKNLYRGIRQ RPWGKWAAEI RDPRKGVRVW LGTFNTAEEA ARAYDREARK 120 IRGKKAKVNF PNEDDAFSAE YNLKHSNNHQ INNNHNSAAA WNPSPNSNPS IYQQPRDNNL 180 SNYGFNYDLN QIGGYATDPI VISGEENSGS GSEGVNSGDQ NVNFCYVAMK AEEEEKREAP 240 VNEAVVEVQD DDIEVQKLSE ELMAYENYMK FYQIPYLDGQ SQTQNAVAPQ ESVVGELWSF 300 DDAAVAAPVT SSTAM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-21 | 75 | 131 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 2e-21 | 75 | 133 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 65 | 70 | KPKRQR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007051006.2 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF073 | ||||
TrEMBL | A0A061DYW3 | 0.0 | A0A061DYW3_THECC; Integrase-type DNA-binding superfamily protein, putative | ||||
STRING | EOX95163 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 3e-34 | ethylene-responsive element binding protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG004717t1 |
Entrez Gene | 18613616 |
Publications ? help Back to Top | |||
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