PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG004717t1
Common NameTCM_004717
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 316aa    MW: 35229.7 Da    PI: 5.0039
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG004717t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.7e-1975123355
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++k++g
  Thecc1EG004717t1  75 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 123
                       9*******.**********954...4************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.16E-2274132IPR016177DNA-binding domain
PROSITE profilePS5103223.77574131IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-3274132IPR001471AP2/ERF domain
SMARTSM003801.1E-3774137IPR001471AP2/ERF domain
PRINTSPR003678.3E-127586IPR001471AP2/ERF domain
CDDcd000181.49E-3275132No hitNo description
PfamPF008476.5E-1275123IPR001471AP2/ERF domain
PRINTSPR003678.3E-1297113IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MCGGAIIAEF IPRNRGRGVT ASDLWPFAKI NGFSSDLSQP NPDASFSHFK RPQPQPSLGD  60
EQVEKKPKRQ RKNLYRGIRQ RPWGKWAAEI RDPRKGVRVW LGTFNTAEEA ARAYDREARK  120
IRGKKAKVNF PNEDDAFSAE YNLKHSNNHQ INNNHNSAAA WNPSPNSNPS IYQQPRDNNL  180
SNYGFNYDLN QIGGYATDPI VISGEENSGS GSEGVNSGDQ NVNFCYVAMK AEEEEKREAP  240
VNEAVVEVQD DDIEVQKLSE ELMAYENYMK FYQIPYLDGQ SQTQNAVAPQ ESVVGELWSF  300
DDAAVAAPVT SSTAM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2175131360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A2e-21751331574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16570KPKRQR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007051006.20.0PREDICTED: ethylene-responsive transcription factor ERF073
TrEMBLA0A061DYW30.0A0A061DYW3_THECC; Integrase-type DNA-binding superfamily protein, putative
STRINGEOX951630.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.13e-34ethylene-responsive element binding protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]