PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG004712t1
Common NameTCM_004712
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 288aa    MW: 32115.4 Da    PI: 4.5757
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG004712t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.73.9e-1062971755
               AP2 17 AeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      AeIrdp   gk  r++lg+f taee a+a+++ ++k++g
  Thecc1EG004712t1 62 AEIRDP---GKGVRVWLGTFNTAEEVARAYDRKARKIRG 97
                      9****8...545*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.83E-2150106No hitNo description
SMARTSM003801.1E-1951111IPR001471AP2/ERF domain
PROSITE profilePS5103214.15751105IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-1361106IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.6E-2062107IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MCGGAIIADF IPRKHGRNVT ASDLWPNPPF AKTDGFNFEL CQIGHSDSLS HFKGPQTKPS  60
LAEIRDPGKG VRVWLGTFNT AEEVARAYDR KARKIRGKKA KVNFPDEEND FSIQYNQDHF  120
NNHEINNHNS AATWNSIPNS NPPVYPQPCK NLDNYGFGYD LNQFDGYATD PIVISGEKNS  180
VSGSEGSYSC NPNVNNGCLY GPVKVEEEDE EKREEPVNRV VLQVQEENQV ERFSEELMAY  240
ENYMKFFQIP YLDGQSTTQT VAVPSENAIG ELWSFDDGGV PVTSTAM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017973671.10.0PREDICTED: ethylene-responsive transcription factor ERF071
TrEMBLA0A061DQX30.0A0A061DQX3_THECC; Integrase-type DNA-binding superfamily protein, putative
STRINGEOX951590.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.13e-18ethylene-responsive element binding protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]