PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG004712t1 | ||||||||
Common Name | TCM_004712 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | ERF | ||||||||
Protein Properties | Length: 288aa MW: 32115.4 Da PI: 4.5757 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 31.7 | 3.9e-10 | 62 | 97 | 17 | 55 |
AP2 17 AeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 AeIrdp gk r++lg+f taee a+a+++ ++k++g Thecc1EG004712t1 62 AEIRDP---GKGVRVWLGTFNTAEEVARAYDRKARKIRG 97 9****8...545*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.83E-21 | 50 | 106 | No hit | No description |
SMART | SM00380 | 1.1E-19 | 51 | 111 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 14.157 | 51 | 105 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.58E-13 | 61 | 106 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.6E-20 | 62 | 107 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MCGGAIIADF IPRKHGRNVT ASDLWPNPPF AKTDGFNFEL CQIGHSDSLS HFKGPQTKPS 60 LAEIRDPGKG VRVWLGTFNT AEEVARAYDR KARKIRGKKA KVNFPDEEND FSIQYNQDHF 120 NNHEINNHNS AATWNSIPNS NPPVYPQPCK NLDNYGFGYD LNQFDGYATD PIVISGEKNS 180 VSGSEGSYSC NPNVNNGCLY GPVKVEEEDE EKREEPVNRV VLQVQEENQV ERFSEELMAY 240 ENYMKFFQIP YLDGQSTTQT VAVPSENAIG ELWSFDDGGV PVTSTAM* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017973671.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF071 | ||||
TrEMBL | A0A061DQX3 | 0.0 | A0A061DQX3_THECC; Integrase-type DNA-binding superfamily protein, putative | ||||
STRING | EOX95159 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 3e-18 | ethylene-responsive element binding protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG004712t1 |
Entrez Gene | 18613612 |
Publications ? help Back to Top | |||
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