PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG004710t1
Common NameTCM_004710
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 296aa    MW: 33443.2 Da    PI: 5.1209
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG004710t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.6e-1878126355
               AP2   3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       y+G+r+++ +g+W+AeIrd       +  r++lg+f taeeAa+a+++ ++k++g
  Thecc1EG004710t1  78 YRGIRQRP-WGKWAAEIRDlG-----KgVRVWLGTFNTAEEAARAYDREARKIWG 126
                       9*******.**********55.....44***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.39277134IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-3077136IPR001471AP2/ERF domain
SMARTSM003801.9E-3677140IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-2277135IPR016177DNA-binding domain
PRINTSPR003677.5E-127889IPR001471AP2/ERF domain
CDDcd000185.65E-3378135No hitNo description
PfamPF008471.1E-1178126IPR001471AP2/ERF domain
PRINTSPR003677.5E-12100116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MCGGAIIADF IPRKRGRNVT ASDLWPNPPF AKTDGFNSEL CQIGHSDSLS HFKGPQTEPS  60
LGVEQVEKKP KRQRKNLYRG IRQRPWGKWA AEIRDLGKGV RVWLGTFNTA EEAARAYDRE  120
ARKIWGKKAK VNFPDEENDF SIQYNQDHFN NHEINNHNSA AVWNSIPNSN PPVYPQPYPI  180
VISGEKNSVS GSEGFYSCNP NVNNGCLYGP VKVEEEDEEK REEPVNRVVL QVQEENQVER  240
FSEELMAYEN YMKFFQIPYL DGQSTTQTVA VPPENVIGEL WSFDDGGVPV TSTTM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-2078134360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16873KPKRQR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017973671.10.0PREDICTED: ethylene-responsive transcription factor ERF071
TrEMBLA0A061DS020.0A0A061DS02_THECC; Integrase-type DNA-binding superfamily protein, putative
STRINGEOX951570.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.15e-32ethylene-responsive element binding protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]