PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG004566t1

Common Name

TCM_004566

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

HB-other

Protein Properties

Length: 1028aa MW: 113162 Da PI: 8.994

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG004566t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	16.3	1.7e-05	69	125	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++++F + +s++e +e+++ g+t +qV+ +F +R++ +k Thecc1EG004566t1 69 KRPRDLLNPKAVKYMQAVFSIKDAISKKESREISALFGVTLTQVRDFFASQRTRVRK 125 799***************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.09	66	126	IPR001356	Homeobox domain
SMART	SM00389	2.8E-4	68	130	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.37E-6	68	130	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-6	69	138	IPR009057	Homeodomain-like
CDD	cd00086	1.10E-4	69	126	No hit	No description
Gene3D	G3DSA:1.20.930.10	1.7E-4	226	319	IPR017923	Transcription factor IIS, N-terminal
SuperFamily	SSF47676	6.54E-5	227	318	IPR017923	Transcription factor IIS, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1028 aa Download sequence Send to blast
MDVLKENLAE VEIGNTVESL QNFIDLQREL FHSQIDQLQN IVVTQCKLTG VNPLAQEMAA 60 GALSIKIGKR PRDLLNPKAV KYMQAVFSIK DAISKKESRE ISALFGVTLT QVRDFFASQR 120 TRVRKQVRLS REKAVRSNAC KETEEGVVLS ESDAMIPVEP VPLNSVGPVN AEEAPSCSTL 180 DDALTGIDEL DKHFVENIFT KMRKEETFSG QVKLLEWILQ IQNPSVLYWF LTKGGVMILA 240 TWLSQAAVEE QTTVLFIILK VLCHLPLQKA LPEQMSAILQ SVNKLCLYRF SDISHRARLL 300 ISRWSKMFAR SQAAKKPNGL KSSADAQNEL LLKQSISEIM GDEPWQSNVD NSEEILATSN 360 VRKLESPQVL KLLPASMDDS TKKNILGVSG SHSRERRKVQ LVEQPGQKMA GKSSQTTRTV 420 PISQSRPMSA DDIQKAKMRA LYMQSKYGKT GSSSNGMNEA KSEGLNKPST SQASFSPPVS 480 KVHVRPAEEQ KKPVILPPKT SNRLGTCLDP KQNMDSKEPP WEKCQKVKIP WHTPPEVKLN 540 ELWRVGAGEN SKEVDVQKNR NRRERETFYY TIQEIPSNPK EPWDREMDYD DTLTPEIPTE 600 QPPDTDSTET QVTHGEHVNS AATLAPSSSH IGGGVAAEPD LELLAVLLKN PALVFALTSG 660 QAGNLTSEET VKLLDMIKAG GAGNSNNIGK NVEEKVEVSL PSPTPSSNPG TSGWKPEAVR 720 NPFSQQSQIG NTVAQASLGV GTTTPVAERL PATSMAAPQQ DANGQLLAQQ LAAAIAQLLP 780 QSSAMTPEKR QSPNVAFSHH GHPSNSPAMQ PPASEIALTL KNLPIANSSL TNLSAAAGPS 840 LRVETLTNVK PAPISMTPNA PEKLHSSFSI SPLMPTLSRP QTPPHLRPQL PQVTDPPLHT 900 HLYSSRPPVG NIGPMSDPWR ARQSLASNPL SQANQTNYNA SFGGSVQPQS RSGPPWEGNE 960 YVGHDGFESW SPENSPNRFS EYVPGRNYLE PRMNSGWSYR PDRSWQRSTP GYRDQNREGN 1020 RRWRDRR*

Sequence ? help Back to Top

Protein Sequence Length: 1028 aa Download sequence Send to blast

MDVLKENLAE VEIGNTVESL QNFIDLQREL FHSQIDQLQN IVVTQCKLTG VNPLAQEMAA  60
GALSIKIGKR PRDLLNPKAV KYMQAVFSIK DAISKKESRE ISALFGVTLT QVRDFFASQR  120
TRVRKQVRLS REKAVRSNAC KETEEGVVLS ESDAMIPVEP VPLNSVGPVN AEEAPSCSTL  180
DDALTGIDEL DKHFVENIFT KMRKEETFSG QVKLLEWILQ IQNPSVLYWF LTKGGVMILA  240
TWLSQAAVEE QTTVLFIILK VLCHLPLQKA LPEQMSAILQ SVNKLCLYRF SDISHRARLL  300
ISRWSKMFAR SQAAKKPNGL KSSADAQNEL LLKQSISEIM GDEPWQSNVD NSEEILATSN  360
VRKLESPQVL KLLPASMDDS TKKNILGVSG SHSRERRKVQ LVEQPGQKMA GKSSQTTRTV  420
PISQSRPMSA DDIQKAKMRA LYMQSKYGKT GSSSNGMNEA KSEGLNKPST SQASFSPPVS  480
KVHVRPAEEQ KKPVILPPKT SNRLGTCLDP KQNMDSKEPP WEKCQKVKIP WHTPPEVKLN  540
ELWRVGAGEN SKEVDVQKNR NRRERETFYY TIQEIPSNPK EPWDREMDYD DTLTPEIPTE  600
QPPDTDSTET QVTHGEHVNS AATLAPSSSH IGGGVAAEPD LELLAVLLKN PALVFALTSG  660
QAGNLTSEET VKLLDMIKAG GAGNSNNIGK NVEEKVEVSL PSPTPSSNPG TSGWKPEAVR  720
NPFSQQSQIG NTVAQASLGV GTTTPVAERL PATSMAAPQQ DANGQLLAQQ LAAAIAQLLP  780
QSSAMTPEKR QSPNVAFSHH GHPSNSPAMQ PPASEIALTL KNLPIANSSL TNLSAAAGPS  840
LRVETLTNVK PAPISMTPNA PEKLHSSFSI SPLMPTLSRP QTPPHLRPQL PQVTDPPLHT  900
HLYSSRPPVG NIGPMSDPWR ARQSLASNPL SQANQTNYNA SFGGSVQPQS RSGPPWEGNE  960
YVGHDGFESW SPENSPNRFS EYVPGRNYLE PRMNSGWSYR PDRSWQRSTP GYRDQNREGN  1020
RRWRDRR*

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007050831.2	0.0	PREDICTED: homeobox protein LUMINIDEPENDENS
Swissprot	Q38796	0.0	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	A0A061DY79	0.0	A0A061DY79_THECC; Homeodomain-like superfamily protein, putative
STRING	EOX94988	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10876	24	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	0.0	HB-other family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG004566t1
Entrez Gene	18613500

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]