PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG004558t1 | ||||||||
Common Name | TCM_004558 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | C3H | ||||||||
Protein Properties | Length: 477aa MW: 51104.4 Da PI: 8.9183 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.4 | 1.8e-11 | 49 | 75 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++ + C +++rtG+C yG+rC+++H++ Thecc1EG004558t1 49 PGVPDCVYYMRTGFCGYGNRCRYNHPR 75 57899********************96 PP | |||||||
2 | zf-CCCH | 40.1 | 6e-13 | 94 | 120 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f+++tGtCk+G++CkF+H++ Thecc1EG004558t1 94 PGEPACQFYLKTGTCKFGASCKFHHPK 120 57899********************96 PP | |||||||
3 | zf-CCCH | 36.6 | 7.5e-12 | 141 | 166 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G +CkF+H++ Thecc1EG004558t1 141 GEKECSYYLKTGQCKFGITCKFHHPQ 166 7899********************97 PP | |||||||
4 | zf-CCCH | 36.5 | 8.3e-12 | 297 | 323 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++C+++H++ Thecc1EG004558t1 297 PGEPECQYYLRTGDCKFGSSCRYHHPR 323 5799*********************96 PP | |||||||
5 | zf-CCCH | 36.3 | 9.4e-12 | 344 | 369 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + +C+f++++G+Ck+G++CkF H++ Thecc1EG004558t1 344 GVQPCSFYLQNGHCKFGSTCKFDHPM 369 6789********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.314 | 48 | 76 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.7E-7 | 48 | 75 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-8 | 50 | 75 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-6 | 53 | 76 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-4 | 54 | 75 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.4E-7 | 93 | 120 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.014 | 93 | 121 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-10 | 95 | 120 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.85E-6 | 97 | 120 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.0E-4 | 99 | 120 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.821 | 139 | 167 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.3E-5 | 139 | 166 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.2E-9 | 141 | 166 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.46E-6 | 141 | 167 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.4E-4 | 145 | 165 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.817 | 296 | 324 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.0E-6 | 296 | 323 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.6E-9 | 298 | 323 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.02E-6 | 300 | 325 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.3E-5 | 302 | 323 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-6 | 342 | 369 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.366 | 342 | 370 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-6 | 344 | 373 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.4E-9 | 344 | 369 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-5 | 346 | 368 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 477 aa Download sequence Send to blast |
MELYGRNPGR NGSQSGHQPE WSPAGPETGL EESMWQLSLR GTESYPERPG VPDCVYYMRT 60 GFCGYGNRCR YNHPRNRAAV EAAVRATGEY PERPGEPACQ FYLKTGTCKF GASCKFHHPK 120 HGGGSFSHVP LNIYGYPLRP GEKECSYYLK TGQCKFGITC KFHHPQPAGT SMPASAPQFY 180 QPVQSPSVPM PEQYGGASTS VRVARPPLLP GSYVQGAYGP VLFSPGVVPI PGWSHYSAPV 240 SPVLSPGAQP AVGATSLYGL TQLSSSTPSL AGPYSSVPSS TGPASSNQKE QTFPERPGEP 300 ECQYYLRTGD CKFGSSCRYH HPRDRVVPRT NCVLSPMGLP LRPGVQPCSF YLQNGHCKFG 360 STCKFDHPMG TMRYSPSASS LIDMPVAPYP VGSLLATLAP SSSSSELRPE LISGSKKDSY 420 LSRIPSSAST SSSSVGLIFS QTGSVPLSDL QLSSQSSVPL SSSRSTRQGG EVRRSN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007050814.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 32 | ||||
Swissprot | Q84W91 | 0.0 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | A0A061DS91 | 0.0 | A0A061DS91_THECC; Zinc finger C-x8-C-x5-C-x3-H type family protein | ||||
STRING | EOX94971 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5912 | 26 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.3 | 0.0 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG004558t1 |
Entrez Gene | 18613492 |
Publications ? help Back to Top | |||
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