PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG004548t1

Common Name

TCM_004548

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

CO-like

Protein Properties

Length: 374aa MW: 42093.9 Da PI: 6.4406

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG004548t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23	1.6e-07	11	53	2	38
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 + r C+ +++ ++ l+C+ ++ lC +C e H+ H Thecc1EG004548t1 11 QRRLCDYCNQSKALLYCRADSAKLCFSCDREVHSAnqlftrHP 53 6789****99*******************6566666665 PP
2	zf-B_box	26.8	1.1e-08	55	99	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg.....Htvvpl 42 + C+ +++ ++++fCe+ q+ +C +C e+Hk H+++p+ Thecc1EG004548t1 55 SQLCDACDKSPASIFCETEQSVFCSNCDWESHKCsssslHNRRPI 99 578*****************************5577888888776 PP
3	CCT	63.4	6.7e-22	329	371	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 R+ a++RYkeKrktR+++K+irYesRK++AesR R+KGrF+k Thecc1EG004548t1 329 RDSAISRYKEKRKTRRYDKHIRYESRKVRAESRTRIKGRFAKV 371 899**************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	11.064	10	57	IPR000315	B-box-type zinc finger
SMART	SM00336	1.6E-13	10	57	IPR000315	B-box-type zinc finger
Pfam	PF00643	3.9E-6	11	54	IPR000315	B-box-type zinc finger
CDD	cd00021	9.79E-7	13	57	No hit	No description
PROSITE profile	PS50119	10.466	53	99	IPR000315	B-box-type zinc finger
Pfam	PF00643	3.8E-6	55	99	IPR000315	B-box-type zinc finger
CDD	cd00021	6.43E-6	57	99	No hit	No description
SMART	SM00336	0.3	58	99	IPR000315	B-box-type zinc finger
PROSITE profile	PS51017	14.842	329	371	IPR010402	CCT domain
Pfam	PF06203	2.5E-16	329	371	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MTDQKNNNQK QRRLCDYCNQ SKALLYCRAD SAKLCFSCDR EVHSANQLFT RHPRSQLCDA 60 CDKSPASIFC ETEQSVFCSN CDWESHKCSS SSLHNRRPIE GFSGCPSVSE LVNSFGIEDL 120 GSKTLFLSEE KVGCGDGGED DGLLDLLSWE TPEFSSLDDL IVSSDFGHGF KPTDVPPLRK 180 NRNASCGRHK EEMLLQLREL AKSEPNLSTD FENVTGFLPL LPNTYNSQPG SVHTSCKIDK 240 DPIPFPAYEL SAPQCFSDNV EMANQVFLPF SQLRGYTEES AVVPNEHLDT SRTAHVNDSL 300 EDQLQHQIAA GTTSALPKIV VHELNSQERD SAISRYKEKR KTRRYDKHIR YESRKVRAES 360 RTRIKGRFAK VEH*

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MTDQKNNNQK QRRLCDYCNQ SKALLYCRAD SAKLCFSCDR EVHSANQLFT RHPRSQLCDA  60
CDKSPASIFC ETEQSVFCSN CDWESHKCSS SSLHNRRPIE GFSGCPSVSE LVNSFGIEDL  120
GSKTLFLSEE KVGCGDGGED DGLLDLLSWE TPEFSSLDDL IVSSDFGHGF KPTDVPPLRK  180
NRNASCGRHK EEMLLQLREL AKSEPNLSTD FENVTGFLPL LPNTYNSQPG SVHTSCKIDK  240
DPIPFPAYEL SAPQCFSDNV EMANQVFLPF SQLRGYTEES AVVPNEHLDT SRTAHVNDSL  300
EDQLQHQIAA GTTSALPKIV VHELNSQERD SAISRYKEKR KTRRYDKHIR YESRKVRAES  360
RTRIKGRFAK VEH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017969488.1	0.0	PREDICTED: zinc finger protein CONSTANS-LIKE 13
TrEMBL	A0A061DQF5	0.0	A0A061DQF5_THECC; B-box type zinc finger protein with CCT domain, putative
STRING	EOX94955	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8148	27	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47890.1	1e-101	B-box type zinc finger protein with CCT domain

Link Out ? help Back to Top
Phytozome	Thecc1EG004548t1
Entrez Gene	18613482

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]