PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG004509t1
Common NameTCM_004509
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 405aa    MW: 45338 Da    PI: 8.3159
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG004509t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.93e-15121168148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+WT+ Ed++l d++k  G g W++I++  g++R++k+c++rw++yl
  Thecc1EG004509t1 121 RGAWTATEDKILTDYIKARGEGKWRSIPKAAGLKRCGKSCRLRWLNYL 168
                       89********************************************97 PP
2Myb_DNA-binding50.35.6e-16174219148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ T +E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
  Thecc1EG004509t1 174 RGNITRDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTVL 219
                       7899******************.*********.************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.524116168IPR017930Myb domain
SuperFamilySSF466895.08E-28119215IPR009057Homeodomain-like
SMARTSM007176.5E-11120170IPR001005SANT/Myb domain
PfamPF002493.4E-13121168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-21122175IPR009057Homeodomain-like
CDDcd001671.59E-7123168No hitNo description
PROSITE profilePS5129425.011169223IPR017930Myb domain
SMARTSM007175.2E-16173221IPR001005SANT/Myb domain
PfamPF002493.1E-14174219IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-24176222IPR009057Homeodomain-like
CDDcd001673.57E-11178219No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MLQIEALKRT VNDWKIKHIF REGNNDADTL AKEGVNREVD LVEINNHVDA WSGWRLRFCS  60
SPVVLTRNSD PIHWETTANF RLGVCTFSYI QTPAQNTGRD TIEQQQMGRK PCCSKEEGLN  120
RGAWTATEDK ILTDYIKARG EGKWRSIPKA AGLKRCGKSC RLRWLNYLRP GIKRGNITRD  180
EEDLIIRLHK LLGNRWSLIA GRLPGRTDNE IKNYWNTVLS KRAQVKKFDH TNKDETKQRF  240
ISWSKKAPTS SGVIQAKAGR CTKVFTTPQK QVIGRGENNN IARTAPSTDA KFVHETAVES  300
GFSDGSFTLL SSKEENPSIS KFAMDFDIGD INISEALASD FPQLGDFELR DINSVIYEYG  360
TNDCGQALLS SEGMVGNWSG NDCVEANLDS DFGFLAAFLG SAEL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-2411922325128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017976312.10.0PREDICTED: transcription factor TT2
TrEMBLA0A061DQ120.0A0A061DQ12_THECC; Myb domain protein 4, putative
STRINGEOX949090.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.15e-60MYB family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]