PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG004433t1

Common Name

TCM_004433

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bHLH

Protein Properties

Length: 340aa MW: 37987.5 Da PI: 5.5508

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG004433t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.9	5e-05	219	251	9	46
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLek 46 +r+RR ri +++ L+ellP++ a+ L Thecc1EG004433t1 219 DRQRRLRIAESIRALQELLPNP-----AERGQATALDD 251 7********************6.....22333445555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.052	210	259	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	0.00107	212	262	No hit	No description
SuperFamily	SSF47459	1.7E-8	213	269	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-7	218	269	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MDVQQGHGNP LMSLNSGGGA SDFSYDYVND SNPHFPMAAG RSENQLSPQS LSQWIDCPKT 60 PHSYVEFLTE NLEKVPTADV LERIGSPVGG VHALDGISEI QRELLHNNAG KAFSSRLDDY 120 SLESEHGKLK LSAYATNSNN CEASASERFL RPHDRLSVSR FSSSEYESHA QQTRTFWMQE 180 PNEDNCNVFQ LQPKETISAF SFLSQPHYSV PKLRASGSDR QRRLRIAESI RALQELLPNP 240 AERGQATALD DIIDHVKFLQ LQMKELSRSR LGGEPTSNPF VFLEGYGHYA LHEQMMNEPL 300 EEMMGKLLEI NPPAATQLLE SRGLFMMPRA LVDGLHRVT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007050662.2	0.0	PREDICTED: uncharacterized protein LOC18613390 isoform X1
TrEMBL	A0A061DPT0	0.0	A0A061DPT0_THECC; Transcription factor bHLH69, putative
STRING	EOX94819	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12956	16	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30980.1	7e-21	LJRHL1-like 2

Link Out ? help Back to Top
Phytozome	Thecc1EG004433t1
Entrez Gene	18613390

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]