PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG004403t1
Common NameTCM_004403
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 687aa    MW: 76527.1 Da    PI: 4.8893
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG004403t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.94.1e-14473519455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Thecc1EG004403t1 473 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 519
                       7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.5E-589191IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.625469518IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-19471535IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.9E-19473535IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.57E-15473523No hitNo description
PfamPF000101.1E-11473518IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-17475524IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MAAPPSSRLQ NMLQEAVQSV QWTYSLFWQI CPQQGILIWS DGYYNGAIKT RKTVQPMEVS  60
AEEASLQRSQ QLRELYESLS AGETNQPARR PCAALSPEDL TESEWFYLMC VSFSFPPGVG  120
LPGKAYARRQ HVWLTGANEV DSKTFSRAIL AKSARIQTVL CIPLLDGVVE LGSTEKVQED  180
LGMVQHVKTF FTDSHNQNPP PPKPALSEHS TSNPATSSDH TRFRSPSIPP MYAAADPPVN  240
ANQEDDDDED EEEEEEEEDD EEEPESDSAE TGQNSRQVPA QDTQAVAAAA EPSELMQLEM  300
SEDIRLGSPD DASNNLDSDF HMLAVSQTGN PADQQRRAES SRRWAMLQEP TGSSLQPPCS  360
GPLPLDELSQ EDTHYSQTVS TILQNQPSRW ADSSSTGYPT YSSHSAFAKW TTRSDHHVHV  420
AVEGTSQWLL KYILFSVPFL HSKYRDENSP KSRDSEAAAR FRKGTPQDEL SANHVLAERR  480
RREKLNERFI ILRSLVPFVT KMDKASILGD TIEYVKQLRK KIQELETHNR QMEADKQRSR  540
SADSPQRTSS FKDQRSGVTV SERARSVGPG TGSDKRKMRI VEGSGGGAKP RTVELSQAME  600
ETSVEVSIIE SDALLELQCA YKEGLLLDIM QMLREQLRIE ITAVQSSLNN GVFAAELRAK  660
VKDNVNGKKV SITEVKRAIN QIIPQC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-2191919192Transcription factor MYC3
4rqw_B2e-2191919192Transcription factor MYC3
4rru_A3e-21817951219Transcription factor MYC3
4rs9_A2e-2191919192Transcription factor MYC3
4ywc_A3e-21817951219Transcription factor MYC3
4ywc_B3e-21817951219Transcription factor MYC3
4yz6_A2e-2191919192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1477482ERRRRE
2478483RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6988581e-100KP698858.1 Gossypium arboreum basic helix-loop-helix protein 130A (bHLH130A) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017981699.10.0PREDICTED: basic helix-loop-helix protein A isoform X1
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A061DRT40.0A0A061DRT4_THECC; BHLH-like DNA binding protein
STRINGEOX947960.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94222836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-105bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]