PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG004275t8
Common NameTCM_004275
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family HSF
Protein Properties Length: 283aa    MW: 32335.2 Da    PI: 4.3816
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG004275t8genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind446.2e-144395254
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHH CS
      HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFv 54
                      Fl+k++++++d++++ ++ ws+ g+sfvv+d+++f++++Lp+yFk+  +  +v
  Thecc1EG004275t8 43 FLTKTFDMVDDPDTNYIVCWSRGGSSFVVWDPHSFSTNLLPRYFKQVLVMELV 95
                      9********************************************98777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-153790IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.3E-1239212IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.08E-123988IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.2E-114396IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.5E-64366IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.5E-68193IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MNPYFSVKEE YPSSSYSQPE DDPPMMLPPQ PMEGLNDPGP PPFLTKTFDM VDDPDTNYIV  60
CWSRGGSSFV VWDPHSFSTN LLPRYFKQVL VMELVKLRQQ QQNTRAYLQA VEERLQGTEK  120
KQKQMMSFLA RAMQNPAFLQ QLMQQKEKRK ELEEAMSKKR RRPIDQGPSG VAVGESIRGS  180
EGTNHVKTEP LEFGDYGFQV TELEALALEM QGYGRARTEQ EEAQDELEHR QCHDKELDEG  240
FWEELLNERF EGELDIPGTE GGEDEDVNVL ADRLGYLGSC PK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147161KRKELEEAMSKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022727960.11e-146heat stress transcription factor A-6b-like isoform X5
SwissprotQ9LUH81e-47HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A061DQI50.0A0A061DQI5_THECC; Heat stress transcription factor A-6b isoform 8
STRINGEOX946441e-134(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.17e-50heat shock transcription factor A6B
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]