PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG004275t6
Common NameTCM_004275
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family HSF
Protein Properties Length: 332aa    MW: 38104.8 Da    PI: 5.233
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG004275t6genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.31.6e-35121042103
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k++++++d++++ ++ ws+ g+sfvv+d+++f++++Lp+yFkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g+k+ll
  Thecc1EG004275t6  12 FLTKTFDMVDDPDTNYIVCWSRGGSSFVVWDPHSFSTNLLPRYFKHNNFSSFVRQLNTYGFRKIDPDK---------WEFTNEGFLRGQKHLL 95 
                       9****************************************************************999.........**************** PP

                       XXXXXXXXX CS
      HSF_DNA-bind  95 ekikrkkse 103
                       ++i+r+k++
  Thecc1EG004275t6  96 KSIRRRKTT 104
                       ******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.8E-608101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.1E-388101IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467859.25E-358101IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.6E-3212101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-191235IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-195062IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405175IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MEGLNDPGPP PFLTKTFDMV DDPDTNYIVC WSRGGSSFVV WDPHSFSTNL LPRYFKHNNF  60
SSFVRQLNTY GFRKIDPDKW EFTNEGFLRG QKHLLKSIRR RKTTSQPPPS QQALGPCVEV  120
GRFGLDGEVD RLRRDKQVLV MELVKLRQQQ QNTRAYLQAV EERLQGTEKK QKQMMSFLAR  180
AMQNPAFLQQ LMQQKEKRKE LEEAMSKKRR RPIDQGPSGV AVGESIRGSE GTNHVKTEPL  240
EFGDYGFQVT ELEALALEMQ GYGRARTEQE EAQDELEHRQ CHDKELDEGF WEELLNERFE  300
GELDIPGTEG GEDEDVNVLA DRLGYLGSCP K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-281010418123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196210KRKELEEAMSKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007050483.20.0PREDICTED: heat stress transcription factor A-6b
RefseqXP_007050484.20.0PREDICTED: heat stress transcription factor A-6b
RefseqXP_007050485.20.0PREDICTED: heat stress transcription factor A-6b
RefseqXP_007050487.20.0PREDICTED: heat stress transcription factor A-6b
SwissprotQ9LUH81e-127HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A061DQG30.0A0A061DQG3_THECC; DNA binding protein, putative isoform 3
TrEMBLA0A061DRG40.0A0A061DRG4_THECC; DNA binding protein, putative isoform 1
STRINGEOX946440.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-129heat shock transcription factor A6B
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]