PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG004275t5
Common NameTCM_004275
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family HSF
Protein Properties Length: 363aa    MW: 41675.7 Da    PI: 4.9066
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG004275t5genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.11.9e-35431352103
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k++++++d++++ ++ ws+ g+sfvv+d+++f++++Lp+yFkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g+k+ll
  Thecc1EG004275t5  43 FLTKTFDMVDDPDTNYIVCWSRGGSSFVVWDPHSFSTNLLPRYFKHNNFSSFVRQLNTYGFRKIDPDK---------WEFTNEGFLRGQKHLL 126
                       9****************************************************************999.........**************** PP

                       XXXXXXXXX CS
      HSF_DNA-bind  95 ekikrkkse 103
                       ++i+r+k++
  Thecc1EG004275t5 127 KSIRRRKTT 135
                       ******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.4E-3837127IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.8E-6039132IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.1E-3439132IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.3E-194366IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.3E-3243132IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-198193IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434082106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-1994106IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MNPYFSVKEE YPSSSYSQPE DDPPMMLPPQ PMEGLNDPGP PPFLTKTFDM VDDPDTNYIV  60
CWSRGGSSFV VWDPHSFSTN LLPRYFKHNN FSSFVRQLNT YGFRKIDPDK WEFTNEGFLR  120
GQKHLLKSIR RRKTTSQPPP SQQALGPCVE VGRFGLDGEV DRLRRDKQVL VMELVKLRQQ  180
QQNTRAYLQA VEERLQGTEK KQKQMMSFLA RAMQNPAFLQ QLMQQKEKRK ELEEAMSKKR  240
RRPIDQGPSG VAVGESIRGS EGTNHVKTEP LEFGDYGFQV TELEALALEM QGYGRARTEQ  300
EEAQDELEHR QCHDKELDEG FWEELLNERF EGELDIPGTE GGEDEDVNVL ADRLGYLGSC  360
PK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A9e-284113518123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227241KRKELEEAMSKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007050483.20.0PREDICTED: heat stress transcription factor A-6b
RefseqXP_007050484.20.0PREDICTED: heat stress transcription factor A-6b
RefseqXP_007050485.20.0PREDICTED: heat stress transcription factor A-6b
RefseqXP_007050487.20.0PREDICTED: heat stress transcription factor A-6b
SwissprotQ9LUH81e-131HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A061DRG40.0A0A061DRG4_THECC; DNA binding protein, putative isoform 1
STRINGEOX946440.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-128heat shock transcription factor A6B
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]