PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG004271t1
Common NameTCM_004271
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C2H2
Protein Properties Length: 439aa    MW: 48412.3 Da    PI: 9.439
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG004271t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-057698123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C++C+k F r  nL+ H r H
  Thecc1EG004271t1 76 FVCEICNKGFQRDQNLQLHRRGH 98
                      89*******************88 PP
2zf-C2H212.40.00048152174123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC++C+k +  +s+ k H +t+
  Thecc1EG004271t1 152 WKCEKCSKIYAVQSDWKAHSKTC 174
                       58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.4E-57598IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.86E-67598No hitNo description
PROSITE profilePS5015710.9497698IPR007087Zinc finger, C2H2
SMARTSM003550.0177698IPR015880Zinc finger, C2H2-like
PfamPF121716.8E-57698IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
SMARTSM00355260117147IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.0E-4140173IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.86E-6147172No hitNo description
SMARTSM00355170152172IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MFPAAMSNST SLSEEASVSS GTRVQDFGGL NPIVSTVSPQ TQPQKVKKKR SLPGNPDPDA  60
EVIALSPKTL LATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRNSK EIKKRAYVCP  120
EPTCVHHHPS RALGDLTGIK KHYCRKHGEK KWKCEKCSKI YAVQSDWKAH SKTCGTREYR  180
CDCGTLFSRK DSFITHRAFC DALAEESARL SANQLASAAT IPALHHLPSQ TNPNPSSLFP  240
FQTHISHNPW DSTPTPNPNP NNPLHVKPES HHFSPFYQEP PPPPPKALIT TPFQNLHVSN  300
NPSSNAATSA IPHLSATALL QKAATVGATA TQINNNNNMA SHVSPDFMGF AAGNLVTWHK  360
SNDRFTRDFL GLTGDHQHPH HHHYHGGGNG NVNISMNVRD VLTYAGGVEL QHLERNHSRL  420
KPQGFGFAEP ASETWGDC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-36148212367Zinc finger protein JACKDAW
5b3h_F1e-36148212367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4617241e-136AM461724.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X124416.7, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007050479.20.0PREDICTED: protein indeterminate-domain 12
SwissprotO227591e-127IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLA0A061DRD10.0A0A061DRD1_THECC; Indeterminate(ID)-domain 12
STRINGEOX946360.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-121indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]