PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG004217t1
Common NameTCM_004217
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 304aa    MW: 31796.1 Da    PI: 6.5243
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG004217t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.27.9e-10152196554
                       HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                       h+++Er RR+ri +++  L+el+P+ +      K + a++L + v+Y+k L
  Thecc1EG004217t1 152 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 196
                       99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.53E-15145206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.12147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.3E-15149206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-7152196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-11153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MANNPNEAPA DDFLEQILGL PNFAPTEAGL PGPDGGLAGT AAAAGAPMLL QLSSGDGAGH  60
LAAIGGGGGG AFHGQVFPLG LSLEQGKGGF LKPQEASGSG KRFRDDVVDG RASSVKNVFH  120
GQPMQATVAA APHPPSMRPR VRARRGQATD PHSIAERLRR ERIAERIRAL QELVPSVNKT  180
DRAAMLDEIV DYVKFLRLQV KVLSMSRLGG AGAVAPLVTD IPLSSVEDES GEGGRNQPAW  240
EKWSNDGTER QVAKLMEENV GAAMQFLQSK ALCIMPISLA TAIYHTQPPD TSPIVKPEAN  300
PPA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156161RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017983588.10.0PREDICTED: transcription factor UNE12
SwissprotO227681e-143UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A061DR610.0A0A061DR61_THECC; Basic helix-loop-helix DNA-binding superfamily protein
STRINGEOX945860.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16112888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-126bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]