PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG004187t1

Common Name

TCM_004187

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

WRKY

Protein Properties

Length: 353aa MW: 39415.4 Da PI: 10.1444

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG004187t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99.3	2.4e-31	287	344	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ e+p+++++tYegeHnh+ Thecc1EG004187t1 287 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPSMLIVTYEGEHNHP 344 99*********************9988**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	6.3E-18	238	283	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	2.0E-33	273	345	IPR003657	WRKY domain
PROSITE profile	PS50811	29.953	280	346	IPR003657	WRKY domain
SuperFamily	SSF118290	3.27E-27	283	345	IPR003657	WRKY domain
SMART	SM00774	2.0E-38	285	345	IPR003657	WRKY domain
Pfam	PF03106	2.9E-27	287	344	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MEEVEDANKA AVESCHRVLS ILSQPQDQVH YRNLMAETGE AVFRFKRVVS LLNAGLGHAR 60 VRKLRKLQTP FPQSILLDNP HHTATDYPSK NLQLGYHESS VQELSSHAKT SLYLGNPSLE 120 LSSNGKNPLQ VAQQGPSGHY LYLQQQQLQQ RLQLQQQQQQ QQQQQQQQMK HQAEMMFRKR 180 NSGINLNFDS SSCTPTRSST RSFISSLSID GSVANLDGGS AFNLIGAPRS SDQGSQPKKK 240 CSARGEDGSV KCGSSGRCHC SKKRKHRVKR SIKVPAISSK LADIPPDDYS WRKYGQKPIK 300 GSPHPRGYYK CSSMRGCPAR KHVERCLEEP SMLIVTYEGE HNHPRLPSQS TT*

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MEEVEDANKA AVESCHRVLS ILSQPQDQVH YRNLMAETGE AVFRFKRVVS LLNAGLGHAR  60
VRKLRKLQTP FPQSILLDNP HHTATDYPSK NLQLGYHESS VQELSSHAKT SLYLGNPSLE  120
LSSNGKNPLQ VAQQGPSGHY LYLQQQQLQQ RLQLQQQQQQ QQQQQQQQMK HQAEMMFRKR  180
NSGINLNFDS SSCTPTRSST RSFISSLSID GSVANLDGGS AFNLIGAPRS SDQGSQPKKK  240
CSARGEDGSV KCGSSGRCHC SKKRKHRVKR SIKVPAISSK LADIPPDDYS WRKYGQKPIK  300
GSPHPRGYYK CSSMRGCPAR KHVERCLEEP SMLIVTYEGE HNHPRLPSQS TT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	4e-20	281	347	10	75	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00284	DAP	Transfer from AT2G30590	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid. {ECO:0000269\|PubMed:11449049}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF669800	0.0	KF669800.1 Gossypium hirsutum WRKY transcription factor 111 (WRKY111) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007050397.2	0.0	PREDICTED: probable WRKY transcription factor 21
Swissprot	O04336	1e-131	WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBL	A0A061DP04	0.0	A0A061DP04_THECC; WRKY DNA-binding protein 21
STRING	EOX94554	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3567	28	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30590.1	1e-117	WRKY DNA-binding protein 21

Link Out ? help Back to Top
Phytozome	Thecc1EG004187t1
Entrez Gene	18613218

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]