PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG004056t1
Common NameTCM_004056
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 280aa    MW: 31496.1 Da    PI: 6.407
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG004056t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-18146195355
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr ++ +g+++AeIrd + ng   r++lg+f++ae Aa a+++a+ +++g
  Thecc1EG004056t1 146 YRGVRKRP-WGKYAAEIRDSTRNG--VRVWLGTFDSAEAAALAYDQAAFSMRG 195
                       9*******.**********44465..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.4E-37145209IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-22145205IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.1E-30145203IPR001471AP2/ERF domain
PROSITE profilePS5103222.655145203IPR001471AP2/ERF domain
PfamPF008477.4E-13146195IPR001471AP2/ERF domain
PRINTSPR003674.1E-10146157IPR001471AP2/ERF domain
CDDcd000185.66E-20146204No hitNo description
PRINTSPR003674.1E-10169185IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0009873Biological Processethylene-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MFKARPNKEE ENSLPIKVTS GCHTKTELSV GTERRKEHAG QNLKHTHTAM NNLTPDMDSC  60
FFQYSTPEFS PESSSGSPEP FSCWDDLLLH HNSIPFNFND SEEMLWMDLL AQGPKESSES  120
NSTDGLKEEE VTSDAKQEEP KKDKTYRGVR KRPWGKYAAE IRDSTRNGVR VWLGTFDSAE  180
AAALAYDQAA FSMRGSLATL NFPIEVVRES LQDIKYRCED GCSPVVALKK RHSLRKRSKN  240
KKSKQNEAAR QQQNLVVLED LGADYLEQLL SSCETAAPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-27144206163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-27142206266ATERF1
3gcc_A2e-27142206266ATERF1
5wx9_A8e-271462051574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233241LRKRSKNKK
2235241KRSKNKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017970895.11e-172PREDICTED: ethylene-responsive transcription factor 1B
SwissprotA0A3Q7I5Y92e-76ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A061DQT70.0A0A061DQT7_THECC; Ethylene response factor 1
STRINGEOX944710.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22752876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-49ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  4. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]