PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG003125t3
Common NameTCM_003125
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 517aa    MW: 55922.8 Da    PI: 8.1736
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG003125t3genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.38.6e-16323369455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  Thecc1EG003125t3 323 VHNLSERRRRDRINEKMRALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 369
                       6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-20317385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.044319368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.93E-16322373No hitNo description
Gene3DG3DSA:4.10.280.109.6E-21323377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-13323369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-17325374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MMKLRNRPED EIMELLWQNG QVVVQSQNQR SFKKSPPFKF HDAHQSAPKE IRSSPSHHQH  60
HQQQQQQSVT DHLFMQEDEM ASWLHYPLND ANFDHDFCAD LLYPSSSAAA AANPCVTSTA  120
TAAPPPLGRV SQVSASAAAS APRPPIPPAR RNELESTRIQ NFVHFSRHKT ARVEQSGPSN  180
SKSVVRESTV VDSSETPAMA PDSRGSQAVP SNTEAASGGN NNNASATVSA AAVASTQSAG  240
VSVGATKDNL ATCEVTVTSS PGGSSASAEP ATQKAAPAED RKRKGREPDD AECHSEDAEF  300
ESADTKKQTR GSTSTKRSRA AEVHNLSERR RRDRINEKMR ALQELIPRCN KSDKASMLDE  360
AIEYLKSLQL QVQMMSMGCG MVPMMFPGVQ QYMPTMGMGI GMGMGMDMGI SRPMMPFPNV  420
LAGSALPTPA AAAHLGPRFP LPAFHMPLPV PAPDPSRIQP NNQSEAMLNT LGMQNPTQPR  480
APNFADPYQQ YLGLQQMQLP PLQSQGMAQP SSRKPK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1327332ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017983598.10.0PREDICTED: transcription factor PIF1 isoform X1
TrEMBLA0A061DNN00.0A0A061DNN0_THECC; Phytochrome interacting factor 3-like 5, putative isoform 3
STRINGEOX940410.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.34e-52phytochrome interacting factor 3-like 5
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]