PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG003125t1 | ||||||||
Common Name | TCM_003125 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | bHLH | ||||||||
Protein Properties | Length: 540aa MW: 58332.4 Da PI: 7.2526 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 49.3 | 9.1e-16 | 346 | 392 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P + K +Ka++L +A+eY+ksLq Thecc1EG003125t1 346 VHNLSERRRRDRINEKMRALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 392 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.57E-20 | 340 | 408 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.044 | 342 | 391 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.91E-17 | 345 | 396 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.0E-20 | 346 | 400 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.2E-13 | 346 | 392 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-17 | 348 | 397 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006783 | Biological Process | heme biosynthetic process | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009959 | Biological Process | negative gravitropism | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0010161 | Biological Process | red light signaling pathway | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0015995 | Biological Process | chlorophyll biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 540 aa Download sequence Send to blast |
MNHCVPDFEM GDDYSIPSSS SLTRSKKPPM PEDEIMELLW QNGQVVVQSQ NQRSFKKSPP 60 FKFHDAHQSA PKEIRSSPSH HQHHQQQQQQ SVTDHLFMQE DEMASWLHYP LNDANFDHDF 120 CADLLYPSSS AAAAANPCVT STATAAPPPL GRVSQVSASA AASAPRPPIP PARRNELEST 180 RIQNFVHFSR HKTARVEQSG PSNSKSVVRE STVVDSSETP AMAPDSRGSQ AVPSNTEAAS 240 GGNNNNASAT VSAAAVASTQ SAGVSVGATK DNLATCEVTV TSSPGGSSAS AEPATQKAAP 300 AEDRKRKGRE PDDAECHSED AEFESADTKK QTRGSTSTKR SRAAEVHNLS ERRRRDRINE 360 KMRALQELIP RCNKSDKASM LDEAIEYLKS LQLQVQMMSM GCGMVPMMFP GVQQYMPTMG 420 MGIGMGMGMD MGISRPMMPF PNVLAGSALP TPAAAAHLGP RFPLPAFHMP LPVPAPDPSR 480 IQPNNQSEAM LNTLGMQNPT QPRAPNFADP YQQYLGLQQM QLPPLQSQGM AQPSSRKPK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 350 | 355 | ERRRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00074 | ChIP-chip | Transfer from AT2G20180 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007049883.2 | 0.0 | PREDICTED: transcription factor PIF1 isoform X2 | ||||
Refseq | XP_017983598.1 | 0.0 | PREDICTED: transcription factor PIF1 isoform X1 | ||||
TrEMBL | A0A061DMV9 | 0.0 | A0A061DMV9_THECC; Phytochrome interacting factor 3-like 5, putative isoform 1 | ||||
STRING | EOX94041 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7108 | 26 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20180.3 | 1e-57 | phytochrome interacting factor 3-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG003125t1 |
Entrez Gene | 18612859 |
Publications ? help Back to Top | |||
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