PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG002737t1

Common Name

TCM_002737

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bHLH

Protein Properties

Length: 580aa MW: 62853 Da PI: 6.7362

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG002737t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.1	7.6e-09	384	431	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+ l+P + +k Ka +L + ++Y++sLq Thecc1EG002737t1 384 SHSLAERVRREKISERMKLLQNLVPGC----NKVTGKALMLDEIINYVQSLQ 431 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	9.42E-17	378	449	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.74E-10	378	435	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.2E-16	380	448	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.428	380	430	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.1E-6	384	431	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.2E-10	386	436	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 580 aa Download sequence Send to blast
MENQFFLNAG IPPPARPLHF GPSLSSPMPA WQSLSSAMEI QVTEMNCSPD QSQDCFLNPH 60 WEKSTDYGLQ FDSALSSMVS SPAASNSNIS NESFMIRELI GKLGSIGNSG EISPHSQPLL 120 ASYLNGPNST NTSGYSTPLN SPPKLNLPMM DSLVKEKLPS LEKSMGLNSS VAEFSADPGF 180 AERAAKFSCF GSKSFNGRTS QFGLNNNNEI AAYRSNPLRA DTKLPRVSSS PSLKAMGSQV 240 GGVQGANKNS PLQDRSELAN SQEESTVSEQ NPNGDPGLKA SKDLTSRKRK AVPKAKTKET 300 FASPSANAAK VHDPNEESNE KRCKSTESNG NENGSVKAEE EAKGSNGNAG DEKQNKTNNN 360 NTKPPEPPKD YIHVRARRGQ ATDSHSLAER VRREKISERM KLLQNLVPGC NKVTGKALML 420 DEIINYVQSL QRQVEFLSMK LASVNTRLDF NVDSLMSKDI FQSNTTLPHP IFPIDSSSAS 480 AFFGHQPQQN PALHSNLSSG TMTQCSVDPL DTAICPNLNT HLPPINQFAQ IVPQYPTFCE 540 GDLQTVVQMG YGQNPSQEMA IQSENLQGSN QVSHMKVEL*

Sequence ? help Back to Top

Protein Sequence Length: 580 aa Download sequence Send to blast

MENQFFLNAG IPPPARPLHF GPSLSSPMPA WQSLSSAMEI QVTEMNCSPD QSQDCFLNPH  60
WEKSTDYGLQ FDSALSSMVS SPAASNSNIS NESFMIRELI GKLGSIGNSG EISPHSQPLL  120
ASYLNGPNST NTSGYSTPLN SPPKLNLPMM DSLVKEKLPS LEKSMGLNSS VAEFSADPGF  180
AERAAKFSCF GSKSFNGRTS QFGLNNNNEI AAYRSNPLRA DTKLPRVSSS PSLKAMGSQV  240
GGVQGANKNS PLQDRSELAN SQEESTVSEQ NPNGDPGLKA SKDLTSRKRK AVPKAKTKET  300
FASPSANAAK VHDPNEESNE KRCKSTESNG NENGSVKAEE EAKGSNGNAG DEKQNKTNNN  360
NTKPPEPPKD YIHVRARRGQ ATDSHSLAER VRREKISERM KLLQNLVPGC NKVTGKALML  420
DEIINYVQSL QRQVEFLSMK LASVNTRLDF NVDSLMSKDI FQSNTTLPHP IFPIDSSSAS  480
AFFGHQPQQN PALHSNLSSG TMTQCSVDPL DTAICPNLNT HLPPINQFAQ IVPQYPTFCE  540
GDLQTVVQMG YGQNPSQEMA IQSENLQGSN QVSHMKVEL*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00660	PBM	Transfer from Pp3c6_9520	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017974176.1	0.0	PREDICTED: transcription factor bHLH62
TrEMBL	A0A061DLW8	0.0	A0A061DLW8_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRING	EOX93799	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2332	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-114	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG002737t1
Entrez Gene	18612675

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]