PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG002656t1 | ||||||||
Common Name | TCM_002656 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | C2H2 | ||||||||
Protein Properties | Length: 218aa MW: 25270.6 Da PI: 9.8657 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.7 | 4.3e-05 | 75 | 95 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k Fs++ L H++ H Thecc1EG002656t1 75 CKYCNKKFSNSQALGGHQNAH 95 ******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.77E-7 | 70 | 100 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.5E-5 | 71 | 99 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.988 | 73 | 100 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 75 | 95 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MSNKVSWEDL QDKRMRVKAH EAKLSMEPKL ELRLWNNNEV HQESRKVLNW LDSLDKRPWN 60 ILEPINKEQK REFLCKYCNK KFSNSQALGG HQNAHKRERA LSRKEKGRMD LYNPYGHICS 120 HLCDPFSPMA RVPNPETSQK SLRTNVEAMI QKPYNDSPGY VNNPNFMSSQ IAMPPSDDHF 180 YWSPGGDLSQ PATTPFHSRA PPFKNFGGFQ NTNLHKF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022760054.1 | 2e-57 | zinc finger protein 1-like | ||||
TrEMBL | A0A061DMV7 | 1e-162 | A0A061DMV7_THECC; Uncharacterized protein | ||||
STRING | EOX93732 | 1e-163 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM21300 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25160.1 | 2e-14 | zinc finger protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG002656t1 |
Entrez Gene | 18612620 |
Publications ? help Back to Top | |||
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