PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG002647t1

Common Name

TCM_002647

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

FAR1

Protein Properties

Length: 270aa MW: 30990.3 Da PI: 8.3138

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG002647t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	98	1e-30	100	188	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY++YA++vGF +r+++ ++s r+g++++r++vC+keg+r+ + ++ +++r++ra tr gCka+++vkkek+gkw+vt++++eHnH+l+p Thecc1EG002647t1 100 FYDAYATRVGFIMRVDAFRRSMRDGKVVWRRLVCNKEGFRKLRPRR-SENRKPRAITREGCKAMIVVKKEKTGKWVVTRFVKEHNHQLVP 188 9*****************************************99.9**************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.4E-29	100	188	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
GLELSRKASK PTLSSTPFSL LYFSLQSLCL NPKIHYAVPC ASLDFTLDLQ SMDENPSIEE 60 AENETVQISD GKELDTTEGT SDEEPYVGME FESEEAAKVF YDAYATRVGF IMRVDAFRRS 120 MRDGKVVWRR LVCNKEGFRK LRPRRSENRK PRAITREGCK AMIVVKKEKT GKWVVTRFVK 180 EHNHQLVPIP TSGRRSMLLS QTPDEKDVKI RELTAELQRE RKRSAAFQEQ LDMVLREMEE 240 HSNQLSRNID DIVQSVREIE SKRVALSQS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007049563.2	1e-159	PREDICTED: protein FAR1-RELATED SEQUENCE 1
TrEMBL	A0A061DM22	0.0	A0A061DM22_THECC; Far-red impaired responsive family protein isoform 1 (Fragment)
STRING	EOX93720	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13524	22	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	7e-94	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG002647t1
Entrez Gene	18612616

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]