PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG002532t3

Common Name

TCM_002532

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

HB-other

Protein Properties

Length: 1086aa MW: 123036 Da PI: 8.268

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG002532t3	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	37.3	4.6e-12	5	54	8	57
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++ ql++Le+++e+++yp+++++e A+ lgLt + Vk WF rR ++k+ Thecc1EG002532t3 5 SSLQLQALESFYEEEKYPTQRQMEGYAAALGLTLKEVKGWFVERRRRDKR 54 678*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	7.3E-9	1	59	IPR001356	Homeobox domain
PROSITE profile	PS50071	14.058	1	55	IPR001356	Homeobox domain
CDD	cd00086	1.53E-10	3	54	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.4E-12	3	54	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.65E-11	3	59	IPR009057	Homeodomain-like
Pfam	PF00046	1.8E-9	5	54	IPR001356	Homeobox domain
SMART	SM00571	6.8E-10	381	440	IPR018501	DDT domain
PROSITE profile	PS50827	12.413	381	440	IPR018501	DDT domain
Pfam	PF02791	5.2E-10	383	437	IPR018501	DDT domain
Pfam	PF15612	9.3E-8	662	701	IPR028942	WHIM1 domain
Pfam	PF15613	1.0E-11	794	867	IPR028941	WHIM2 domain
Gene3D	G3DSA:3.90.10.10	3.1E-4	954	1006	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1086 aa Download sequence Send to blast
MKRKSSLQLQ ALESFYEEEK YPTQRQMEGY AAALGLTLKE VKGWFVERRR RDKRDYGIML 60 PIHSMKKLHA PNARNVGGVS AGRKNPKGQG SLFHNRSNTG AALCSRYKSA FSTANKRKKK 120 MLLLQDLSSP QYILKKVFRK DGPPLGVEFD SLPSQAFCHC KGSKNSHPAD QEDQRATRRR 180 TVSELTTIDY QNNCNESAPV KKHGIGKGLM TVWRVVNPEG GDIPTGVDFS NKQIIAPPQT 240 SSPVVRKPPA RNKRRQPLVS LMKQRSLEKK LQEKKRPSIK RREMKSNKDD SNRQLHKEKC 300 ELALEGSTSN KSLDQLLMLV DDEELELREL QAGPNPLTCS DHLGTSGVLG CSLCKDLLAK 360 FPPSSVKMKQ PFSMQPWDSS PDTVKKLFKV FHFLYTYSVT LDICSFTLDE FAQAFHDKDS 420 LLLGKIHVAL LQLLLSDVKL ELSGVLLPHF GLSCKFLALL HSVENQEFVV EFWKTSLNPL 480 TWTEILRQVL VAAGFGSKQG LLRREALSKE MSLMARYGLR PGSLKGELFR ILSERGNNGL 540 KVSDLAKSLP VTELNLTSTT EELEELICST LSSDITLFEK ISSSAYRLRS NSVAKEGNDF 600 HSDTEDSGSV DDDTDDSSAS SSSEDSDCDL GNYYQRKLKH KNYRKSKNNM MTVYTEIDES 660 HPGEVWLLGL MEGEYSDLSI EEKLNALVAL IDLLRAGSSV RMENPSEVIA ECVPNIPHYG 720 SGAKIKRSSN QHNFPRPSWV YGGPKNGVQE AHTSSDSHPL DSSSILKFCE KEKCPSSRMD 780 AKETQTGVDI HPMQSIFLGS DRRYNRYWLF LGPCNAYDPG HRRIYYESSE DGHWEVIDTE 840 EALRALLAVL DDRGKREALL IESLEKREAS LCQEMSTRHL YDAGIRRMPS ESPELDLVRE 900 DSSSPVSDVD NNLSLTIAMN ESLTPFGAIV LEAGKKGEEQ NRKWRRLQEF DMWIWKCFYL 960 KLNAVKYSKR SYLDSLNRCE SCHDLYWRDE KHCKICHTTF ELDFDLEERY AIHVATCREK 1020 GDNSMFPKFK VLSSQLQSLK AAVHAIEEKS SERIKPASVW SFYRWEAHLL LFKAFDFRVL 1080 SPLSS*

Sequence ? help Back to Top

Protein Sequence Length: 1086 aa Download sequence Send to blast

MKRKSSLQLQ ALESFYEEEK YPTQRQMEGY AAALGLTLKE VKGWFVERRR RDKRDYGIML  60
PIHSMKKLHA PNARNVGGVS AGRKNPKGQG SLFHNRSNTG AALCSRYKSA FSTANKRKKK  120
MLLLQDLSSP QYILKKVFRK DGPPLGVEFD SLPSQAFCHC KGSKNSHPAD QEDQRATRRR  180
TVSELTTIDY QNNCNESAPV KKHGIGKGLM TVWRVVNPEG GDIPTGVDFS NKQIIAPPQT  240
SSPVVRKPPA RNKRRQPLVS LMKQRSLEKK LQEKKRPSIK RREMKSNKDD SNRQLHKEKC  300
ELALEGSTSN KSLDQLLMLV DDEELELREL QAGPNPLTCS DHLGTSGVLG CSLCKDLLAK  360
FPPSSVKMKQ PFSMQPWDSS PDTVKKLFKV FHFLYTYSVT LDICSFTLDE FAQAFHDKDS  420
LLLGKIHVAL LQLLLSDVKL ELSGVLLPHF GLSCKFLALL HSVENQEFVV EFWKTSLNPL  480
TWTEILRQVL VAAGFGSKQG LLRREALSKE MSLMARYGLR PGSLKGELFR ILSERGNNGL  540
KVSDLAKSLP VTELNLTSTT EELEELICST LSSDITLFEK ISSSAYRLRS NSVAKEGNDF  600
HSDTEDSGSV DDDTDDSSAS SSSEDSDCDL GNYYQRKLKH KNYRKSKNNM MTVYTEIDES  660
HPGEVWLLGL MEGEYSDLSI EEKLNALVAL IDLLRAGSSV RMENPSEVIA ECVPNIPHYG  720
SGAKIKRSSN QHNFPRPSWV YGGPKNGVQE AHTSSDSHPL DSSSILKFCE KEKCPSSRMD  780
AKETQTGVDI HPMQSIFLGS DRRYNRYWLF LGPCNAYDPG HRRIYYESSE DGHWEVIDTE  840
EALRALLAVL DDRGKREALL IESLEKREAS LCQEMSTRHL YDAGIRRMPS ESPELDLVRE  900
DSSSPVSDVD NNLSLTIAMN ESLTPFGAIV LEAGKKGEEQ NRKWRRLQEF DMWIWKCFYL  960
KLNAVKYSKR SYLDSLNRCE SCHDLYWRDE KHCKICHTTF ELDFDLEERY AIHVATCREK  1020
GDNSMFPKFK VLSSQLQSLK AAVHAIEEKS SERIKPASVW SFYRWEAHLL LFKAFDFRVL  1080
SPLSS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	46	51	ERRRRD
2	47	52	RRRRDK
3	47	54	RRRRDKRD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. May prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing. {ECO:0000250\|UniProtKB:F4HY56}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007049488.2	0.0	PREDICTED: homeobox-DDT domain protein RLT3 isoform X2
Swissprot	F4JRF5	0.0	RLT3_ARATH; Homeobox-DDT domain protein RLT3
TrEMBL	A0A061DNM8	0.0	A0A061DNM8_THECC; Homeodomain-like transcriptional regulator isoform 3
STRING	EOX93644	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	0.0	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Thecc1EG002532t3
Entrez Gene	18612561

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]