PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG002458t1 | ||||||||
Common Name | TCM_002458 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | CO-like | ||||||||
Protein Properties | Length: 415aa MW: 44904.8 Da PI: 4.7202 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.5 | 4.3e-06 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ +++++ +C+++ +lC +C + H+ H++ Thecc1EG002458t1 4 ICDFCGDQRSMVYCRSDAACLCLSCDRNVHSAnalskrHSR 44 7*****************************65677777765 PP | |||||||
2 | zf-B_box | 20.5 | 1e-06 | 46 | 89 | 4 | 41 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 C++++++++ C + + lC++C +H g H++++ Thecc1EG002458t1 46 LLCERCNSQPAFVRCAEERISLCQNCDWMGH-GtstsnstHKRQT 89 57*****************************.5578888888766 PP | |||||||
3 | CCT | 62.9 | 9.7e-22 | 357 | 400 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R a++RYkeK+ktRkFeK++rY+sRKa+A+ R+RvKGrFvk+ Thecc1EG002458t1 357 RSDAVMRYKEKKKTRKFEKRVRYASRKARADVRKRVKGRFVKAG 400 889**************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.542 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.24E-6 | 4 | 47 | No hit | No description |
SMART | SM00336 | 5.7E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.745 | 43 | 90 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.41E-4 | 47 | 90 | No hit | No description |
SMART | SM00336 | 3.8 | 48 | 90 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 15.418 | 357 | 399 | IPR010402 | CCT domain |
Pfam | PF06203 | 2.0E-16 | 357 | 399 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 415 aa Download sequence Send to blast |
MGYICDFCGD QRSMVYCRSD AACLCLSCDR NVHSANALSK RHSRTLLCER CNSQPAFVRC 60 AEERISLCQN CDWMGHGTST SNSTHKRQTI NCYSGCPSAA ELSSVWSFVL ESPSAGESAC 120 EQELGLMSIT ENAERTSWDP TENTISQNGT GVAEVNDDLD ADKGSSWGGS ASVPELRSAP 180 RLLDQPAGST DLLPKLCCPQ TKCPGLCEDD LYADFNMDEV DLNLENYEEL FGVTLNHSEE 240 LFENGGIDSL FGTKDMSAAD SNCQGAVAAE GSSVGLVNAI QPACSNAASA DSMMSNKTDS 300 VLCFTARQAH SSLSFSGLTG ESSAGDYQDC GASSMLLMGE PPWCPPCNEN SFSSATRSDA 360 VMRYKEKKKT RKFEKRVRYA SRKARADVRK RVKGRFVKAG DAYDYDPLNQ TRSC* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007049415.2 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9 isoform X1 | ||||
Refseq | XP_007049416.2 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9 isoform X1 | ||||
Refseq | XP_007049417.2 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9 isoform X1 | ||||
Refseq | XP_017982074.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9 isoform X1 | ||||
Swissprot | Q9SSE5 | 1e-157 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | A0A061DL86 | 0.0 | A0A061DL86_THECC; B-box type zinc finger protein with CCT domain isoform 1 | ||||
STRING | EOX93573 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1682 | 27 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07650.4 | 1e-126 | CONSTANS-like 9 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG002458t1 |
Entrez Gene | 18612516 |
Publications ? help Back to Top | |||
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