PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG002195t1
Common NameTCM_002195
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C3H
Protein Properties Length: 439aa    MW: 47676.1 Da    PI: 8.1532
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG002195t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH352.4e-114873126
                      --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                      ++++ C++++rtG C yG +C+F+H+
  Thecc1EG002195t1 48 PGEPDCSYYLRTGLCGYGTNCRFNHP 73
                      5789*********************9 PP
2zf-CCCH36.21e-1192116327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       ++ C +f++tGtCkyG++Ck++H++
  Thecc1EG002195t1  92 QPDCGYFLKTGTCKYGPTCKYHHPK 116
                       789********************96 PP
3zf-CCCH40.93.3e-13136161227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++C++++rtG Ck+G  CkF+H++
  Thecc1EG002195t1 136 DEKPCPYYMRTGSCKFGVACKFHHPQ 161
                       5789********************97 PP
4zf-CCCH39.59.1e-13281306227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++Cr+++ tGtCkyG+ Ck++H++
  Thecc1EG002195t1 281 DQPECRYYMNTGTCKYGSDCKYHHPK 306
                       689*********************96 PP
5zf-CCCH28.82.1e-09327351226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       +++ C+ +  +G CkyG++C+F H+
  Thecc1EG002195t1 327 GQAVCSSYTMYGLCKYGPTCRFDHP 351
                       7899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.3284775IPR000571Zinc finger, CCCH-type
SMARTSM003568.1E-64774IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-84973IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-55274IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-45372IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.72789117IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-689116IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-992116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-693117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-495115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6133162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.685134162IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-11136161IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-6136161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-5138160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.549279307IPR000571Zinc finger, CCCH-type
SMARTSM003568.1E-6279306IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-10281306IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-7282307IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-6285306IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5325351IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5325352IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.31325353IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-6327351IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-4330350IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MPDNRQVQNN AVSNQSADNI EEAILRLKIN DNNQEVGYSK STAYPDRPGE PDCSYYLRTG  60
LCGYGTNCRF NHPTYAAQGG QYREELPERV GQPDCGYFLK TGTCKYGPTC KYHHPKDRNG  120
AGPVTFNIVG LPMRQDEKPC PYYMRTGSCK FGVACKFHHP QPPSASAGLP VNGPVSSSIL  180
PPSGVPYAGG LPTWSLPRAP YVSGPRLQGP QSYMPVVVSP SQSIIPAHGW STYMGNMSSV  240
SSTGILGSNF AYNSMNPAES GSSGQVFLSS TSASNFPERP DQPECRYYMN TGTCKYGSDC  300
KYHHPKERIA NSAVNNIGPL GLPSRPGQAV CSSYTMYGLC KYGPTCRFDH PYVGYPYNYG  360
LSLPLSVFDT SLLTYQRISP TAHTSEAPLS SKLPDWARNT DSVSKKHQNL ETKNSDDPPE  420
QAASPPHSLQ SSSKASHD*
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007049197.20.0PREDICTED: zinc finger CCCH domain-containing protein 3
SwissprotQ94AD91e-136C3H3_ARATH; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A061DKN80.0A0A061DKN8_THECC; Zinc finger C-x8-C-x5-C-x3-H type family protein isoform 1
STRINGEOX933540.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23802675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-138C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]