PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG002071t1 | ||||||||
Common Name | TCM_002071 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | G2-like | ||||||||
Protein Properties | Length: 274aa MW: 30934 Da PI: 6.6022 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107.1 | 9.4e-34 | 30 | 84 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFveav+qLGG++kAtPktil++m+vkgLtl+h+kSHLQk+Rl Thecc1EG002071t1 30 KPRLRWTVELHERFVEAVTQLGGPDKATPKTILKIMGVKGLTLYHLKSHLQKFRL 84 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.3E-32 | 27 | 85 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.296 | 27 | 87 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.48E-17 | 29 | 85 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.5E-24 | 30 | 85 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.1E-8 | 32 | 82 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.0E-15 | 128 | 170 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MFHSKKPTFN TYDRTCVQGD SGLVLTTDPK PRLRWTVELH ERFVEAVTQL GGPDKATPKT 60 ILKIMGVKGL TLYHLKSHLQ KFRLGRQPQK DFNDQSVSDS RKVSEFYFSK TATGIRACCL 120 SDQSVQQTGG VRLQMEGGGI LNEELEVQKH LQMRIDAQGK YMQTILEKAA AQTLSEENTN 180 SQCYKYFGIQ KYGNMGSMNN LDFVSHVNVP SLEELHSIPA SETAHMEKQW KKLNIENLEN 240 PIVFWSDDLL PENIVIATAD YNSDGDSFKD DHL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 7e-22 | 30 | 86 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 7e-22 | 30 | 86 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 9e-22 | 30 | 86 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 9e-22 | 30 | 86 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 9e-22 | 30 | 86 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 9e-22 | 30 | 86 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 7e-22 | 30 | 86 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 7e-22 | 30 | 86 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 7e-22 | 30 | 86 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 7e-22 | 30 | 86 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 7e-22 | 30 | 86 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 7e-22 | 30 | 86 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061, ECO:0000269|PubMed:25081480, ECO:0000269|PubMed:26239308, ECO:0000305|PubMed:15592750}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269|PubMed:15592750}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007049072.2 | 0.0 | PREDICTED: myb family transcription factor APL isoform X1 | ||||
Swissprot | Q9SAK5 | 9e-68 | APL_ARATH; Myb family transcription factor APL | ||||
TrEMBL | A0A061DKF9 | 0.0 | A0A061DKF9_THECC; Homeodomain-like superfamily protein, putative | ||||
STRING | EOX93229 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5044 | 27 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79430.2 | 4e-70 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG002071t1 |
Entrez Gene | 18612288 |
Publications ? help Back to Top | |||
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