PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG002021t1
Common NameTCM_002021
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family GRAS
Protein Properties Length: 442aa    MW: 48046.4 Da    PI: 5.4286
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG002021t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS380.81.6e-116794383374
              GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                        lLl+cAe+v+ ++le a+ lL ++sel+sp g++ +R+ ayf+ AL+ar+++s+ + y+ l +++ + ++s++ ++al+ ++ +sP++kfsh
  Thecc1EG002021t1  79 GLLLQCAECVAMDNLEDATDLLPEISELSSPFGSSPERVGAYFAHALQARVVSSCLRAYSPLDTKSLTLTQSQKIFNALQSYNSISPLVKFSH 171
                       58******************************************************************9************************ PP

              GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                       +taNqaI +a++ge+rvH+iD+di+qGlQWp L++ LasR+++  s+RiTg+gs    s+e le+tg+rLa+fA++lg+pfef++l  k  + 
  Thecc1EG002021t1 172 FTANQAIFQALDGEDRVHVIDLDIMQGLQWPGLFHILASRSKKIRSMRITGFGS----SSELLESTGRRLADFATSLGLPFEFHPLEGKIGNV 260
                       ******************************************************....9**************************97777777 PP

              GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                        +l++L v++ Ea++V++++  h l+d ++s       +L+l+  ++Pk++++veq+++h ++sFl rf+eal+yysalfd+l  +l+ +s e
  Thecc1EG002021t1 261 TDLSQLGVQSSEAVVVHWMH--HCLYDITGSDLG----TLRLLTLVKPKLITIVEQDLSH-GGSFLGRFVEALHYYSALFDALGDGLGVDSLE 346
                       79****************99..777777777777....9*********************.789***************************** PP

              GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                       r++vE++l+g ei+n+va  g +r+ + + +e+W e l+++GF+pv+l+ + a+qa+lll +++++gy++ ee+g+l lgWkd +L+++SaW+
  Thecc1EG002021t1 347 RHMVEQQLFGSEIRNIVAVGGPKRTGEVK-VERWGEELRRVGFRPVSLGGNPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSLLTASAWQ 438
                       ***********************998887.9*************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.93751418IPR005202Transcription factor GRAS
PfamPF035145.6E-11479438IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MLQSLVPQSP INSNPSSNPN SSMKSKRVER DVSAATGDHS SADDPSTKRP NFSSGDKTAA  60
DEQEDTVIEG ESTGLRLLGL LLQCAECVAM DNLEDATDLL PEISELSSPF GSSPERVGAY  120
FAHALQARVV SSCLRAYSPL DTKSLTLTQS QKIFNALQSY NSISPLVKFS HFTANQAIFQ  180
ALDGEDRVHV IDLDIMQGLQ WPGLFHILAS RSKKIRSMRI TGFGSSSELL ESTGRRLADF  240
ATSLGLPFEF HPLEGKIGNV TDLSQLGVQS SEAVVVHWMH HCLYDITGSD LGTLRLLTLV  300
KPKLITIVEQ DLSHGGSFLG RFVEALHYYS ALFDALGDGL GVDSLERHMV EQQLFGSEIR  360
NIVAVGGPKR TGEVKVERWG EELRRVGFRP VSLGGNPAAQ ASLLLGMFPW KGYTLVEENG  420
CLKLGWKDLS LLTASAWQPS D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-1648343924379Protein SCARECROW
5b3h_D1e-1648343924379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017969872.10.0PREDICTED: scarecrow-like protein 23
SwissprotQ9FHZ10.0SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A061DTB20.0A0A061DTB2_THECC; SCL domain class transcription factor
STRINGEOX931730.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125122631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.10.0GRAS family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]