PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG001955t1
Common NameTCM_001955
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family NAC
Protein Properties Length: 290aa    MW: 33283.6 Da    PI: 7.7402
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG001955t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.14.3e-50181461128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       l pGfrFhPtdeelv +yL++kve++++++ e+ik++diy+++PwdLp+  + ++kewyfF+ r +ky+++ r+nr+t sg+Wkatg dk+++
  Thecc1EG001955t1  18 LLPGFRFHPTDEELVGFYLRRKVENRPISI-EIIKQIDIYRYDPWDLPRVSTVGDKEWYFFCIRGRKYRNSIRPNRVTGSGFWKATGIDKPIY 109
                       579***************************.99***************7777799************************************** PP

               NAM  94 sk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +    +  +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  Thecc1EG001955t1 110 TVkePHDCIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 146
                       97434445***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.01E-569167IPR003441NAC domain
PROSITE profilePS5100555.24618168IPR003441NAC domain
PfamPF023652.8E-2520146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006561Biological Processproline biosynthetic process
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010120Biological Processcamalexin biosynthetic process
GO:0042538Biological Processhyperosmotic salinity response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MEATNMNSTD KGKDDEDLLP GFRFHPTDEE LVGFYLRRKV ENRPISIEII KQIDIYRYDP  60
WDLPRVSTVG DKEWYFFCIR GRKYRNSIRP NRVTGSGFWK ATGIDKPIYT VKEPHDCIGL  120
KKSLVYYRGS AGKGTKTDWM MHEFRLPPNA KDVAQEAEVW TLCRIFKRIP SNKKDAAAAW  180
KDTRNKQNGA YHTSSRTCSL DSENSEQCKS FCDSVLLQND IKPNIMDQVD ARNYFLVGPW  240
TNAMSQQAPF AASCPSFWNP NGDVDIFTNG NWDELRPLVE LALEPSPYL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-511817417171NO APICAL MERISTEM PROTEIN
1ut4_B9e-511817417171NO APICAL MERISTEM PROTEIN
1ut7_A9e-511817417171NO APICAL MERISTEM PROTEIN
1ut7_B9e-511817417171NO APICAL MERISTEM PROTEIN
4dul_A9e-511817417171NAC domain-containing protein 19
4dul_B9e-511817417171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00310DAPTransfer from AT2G43000Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007048954.10.0PREDICTED: transcription factor JUNGBRUNNEN 1
SwissprotQ9SK551e-94NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A061DM210.0A0A061DM21_THECC; NAC domain-containing protein 42
STRINGEOX931110.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.15e-97NAC domain containing protein 42
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  3. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  4. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  5. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  6. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]